Submissions from 2023
Evidence of Transboundary Movement of Chemicals from Mexico to the U.S. in Tijuana River Estuary sediments, Flannery McLamb, Kesten Bozinovic, Zuying Feng, Damian Shea, Miguel F. Vasquez, Chris Stransky, Richard M. Gersberg, Goran Bozinovic, and multiple additional authors
Submissions from 2022
A Newly Discovered Helicocranchia Species (cephalopoda: Cranchiidae: Taoniinae) in the Northern Gulf of Mexico, Heather Judkins, L. Rose-Mann, Annie Lindgren, M. Taite, S. Bush, and M. Vecchione
Finding a Home for the Ram's Horn Squid: Phylogenomic Analyses Support Spirula Spirula (cephalopoda: Decapodiformes) As a Close Relative of Oegopsida, Annie R. Lindgren, Abigail Pratt, Michael Vecchione, and Frank E. Anderson
Measuring Volatile Emissions from Moss Gametophytes: A Review of Methodologies and New Applications, Danlyn L. Brennan, Leslie M. Kollar, Scott Kiel, Timea Deakova, Aurélie Laguerre, Stuart F. McDaniel, Sarah Eppley, Elliott T. Gall, and Todd Rosenstiel
Unveiling the Nature of a Miniature World: a Horizon Scan of Fundamental Questions in Bryology, Jairo Patiño, Irene Bisang, Bernard Goffinet, Lars Hedenäs, Stuart McDaniel, Silvia Pressel, Michael Stech, Claudine Ah-Peng, Sarah Eppley, and multiple additional authors
Submissions from 2021
Stemloop-Finder: a Tool for the Detection of DNA Hairpins with Conserved Motifs., Alyssa A. Pratt, Ellis L. Torrance, George W. Kasun, Kenneth M. Stedman, and Ignacio de la Higuera
Submissions from 2020
Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements, Julie C. Dunning Hotopp, David A. Baltrus, Vincent M. Bruno, John J. Dennehy, Steven R. Gill, Julia A. Maresca, Jelle Matthijnssens, Irene L. J. Newton, Catherine Putonti, David A. Rasko, Antonis Rokas, Simon Roux, Jason E. Stajich, Kenneth M. Stedman, Frank J. Stewart, and J. Cameron Thrash
Submissions from 2019
Trophic ecology of the deep-sea cephalopod assemblage near Bear Seamount in the Northwest Atlantic Ocean, Michelle D. Staudinger, Valerie H. Dimkovikj, Christine A. M. France, Elaina Jorgensen, Heather Judkins, Annie R. Lindgren, Elizabeth K. Shea, and Micheal Vecchione
Submissions from 2018
Assessing the Utility of Transcriptome Data for Inferring Phylogenetic Relationships Among Coleoid Cephalopods, Annie R. Lindgren and Frank E. Anderson
Multiple Acquisitions of Pathogen-Derived Francisella Endosymbionts in Soft Ticks, Jonathan G. Gerhart, H. Auguste Dutcher, Amanda E. Brenner, Abraham S. Moses, Libor Grubhoffer, and Rahul Raghavan
The Genome of Austrofundulus Limnaeus Offers Insights into Extreme Vertebrate Stress Tolerance and Embryonic Development, Josiah Tad Wagner, Param Priya Singh, Amie L. Romney, Claire L. Riggs, Patrick Minx, Steven Cody Woll, Jake Roush, Wesley C. Warren, Anne Brunet, and Jason E. Podrabsky
Urban Forested Parks and Tall Tree Canopies Contribute to Macrolichen Epiphyte Biodiversity in Urban Landscapes, Hannah M. Prather, Sarah M. Eppley, and Todd N. Rosenstiel
Submissions from 2017
Emergence of New sRNAs in Enteric Bacteria is Associated with Low Expression and Rapid Evolution, Fenil R. Kacharia, Jess A. Millar, and Rahul Raghavan
Extreme Mutation Tolerance: Nearly Half of the Archaeal Fusellovirus Sulfolobus Spindle-Shaped Virus 1 Genes Are Not Required for Virus Function, Including the Minor Capsid Protein Gene vp3, Eric Iverson, David A. Goodman, Madeline E. Gorchels, and Kenneth M. Stedman
Mechanism and Catalytic Strategy of the Prokaryotic Specific GTP Cyclohydrolase IB, Naduni Paranagama, Shilah A. Bonnett, Jonathan Alvarez, Amit Luthra, Boguslaw Stec, Andrew Gustafson, Dirk Iwata-Reuyl, and Manal A. Swairjo
Passive Warming Reduces Stress and Shifts Reproductive Effort in the Antarctic Moss, Polytrichastrum alpinum, Erin E. Shortlidge, Sarah M. Eppley, Hans Kohler, Todd N. Rosenstiel, Gustavo E. Zúñiga, and Angélica Casanova-Katny
PCR-Activated Cell Sorting as a General, Cultivation-Free Method for High-Throughput Identification and Enrichment of Virus Hosts, Shaun W. Lim, Shea T. Lance, Kenneth M. Stedman, and Adam R. Abate
Persulfide Formation Mediates Cysteine and Homocysteine Biosynthesis in Methanosarcina acetivorans, Benjamin J. Rauch, John Klimek, Larry David, and John J. Perona
Protection of the Queuosine Biosynthesis Enzyme QueF from Irreversible Oxidation by a Conserved Intramolecular Disulfide, Adeba Mohammad, Adriana Bon Ramos, Bobby W.K. Lee, Spencer William Cohen, Maryam K. Kiani, Dirk Iwata-Reuyl, Boguslaw Stec, and Manal A. Swairjo
Robustness of a model microbial community emerges from population structure among single cells of a clonal population, Anne W. Thompson, Serdar Turkarslan, Christina E. Arens, Adrian Lopez Garcia de Lomana, Arjun V. Raman, David A. Stahl, and Nitin S. Baliga
Sex-Specific Morphological and Physiological Differences in the Moss Ceratodon purpureus (Dicranales), Mandy L. Slate, Todd N. Rosenstiel, and Sarah M. Eppley
Thermosulfuriphilus ammonigenes gen. nov., sp. nov., a Thermophilic, ChemolithoautotrOphic Bacterium Capable of Respiratory Ammonification of Nitrate with Elemental Sulfur, Galina B. Slobodkina, Anna-Louise Reysenbach, Tatyana V. Kolganova, Elizaveta A. Bronch-Osmolovskaya, and Alexander I. Slobodkin
Submissions from 2016
A Francisella-Like Endosymbiont in the Gulf Coast Tick Evolved From a Mammalian Pathogen, Jonathan G. Gerhart, Abraham S. Moses, and Rahul Raghavan
Bayesian Methods for Comparing Species Physiological and Ecological Response Curves, Michael B. Ashcroft, Angélica Casanova-Katny, Kerrie Mengersen, Todd N. Rosenstiel, Johanna D. Turnbull, Jane Wasley, Melinda J. Waterman, Gustavo E. Zúñiga, and Sharon A. Robinson
Crystal Structure of the Archaeosine Synthase QueF-like-Insights into Amidino Transfer and tRNA Recognition by the Tunnel Fold, Xianghan Mei, Jonathan Alvarez, Adriana Bon Ramos, Uttamkumar Samanta, Dirk Iwata-Reuyl, and Manal A. Swairjo
Distribution Drivers and Physiological Responses in Geothermal Bryophyte Communities, Estefanía Llaneza García, Todd N. Rosenstiel, Camille Brianne Graves, Erin E. Shortlidge, and Sarah M. Eppley
Dynamics of Prebiotic RNA Reproduction Illuminated by Chemical Game Theory, Jessica Anne Mellor Yeates, Christian Hilbe, Martin Zwick, Martin. A. Nowak, and Niles Lehman
Genomics-Informed Isolation and Characterization of a Symbiotic Nanoarchaeota System from a Terrestrial Geothermal Environment, Louie Wurch, Richard J. Giannone, Bernard S. Belisle, Carolyn Swift, Sagar Utturkar, Robert L. Hettich, Anna-Louise Reysenbach, and Mircea Podar
Hypoxia and Anoxia Tolerance in the Annual Killifish Austrofundulus Limnaeus, Jason E. Podrabsky and Natalie E. Wilson
Life on the Edge—the Biology of Organisms Inhabiting Extreme Environments: An Introduction to the Symposium, Annie R. Lindgren, Bradley A. Buckley, Sarah M. Eppley, Anna-Louise Reysenbach, Kenneth M. Stedman, and Josiah T. Wagner
Mitochondrial DNA Sequence and Lack of Response to anoxia in the Annual Killifish Austrofundulus Limnaeus, Josiah Tad Wagner, Florisela Herrejon Chavez, and Jason E. Podrabsky
Modeling Microvirus Capsid Protein Evolution Utilizing Metagenomic Sequence Data, Geoffrey S. Diemer and Kenneth M. Stedman
Moss Antheridia Are Desiccation Tolerant: Rehydration Dynamics Influence Sperm Release in Bryum Argenteum, Lloyd R. Stark, D. Nicholas McLetchie, Joshua L. Greenwood, and Sarah M. Eppley
Peering Below the Diffraction Limit: Robust and Specific Sorting of Viruses with Flow Cytometry, Shea T. Lance, David J. Sukovich, Kenneth M. Stedman, and Adam R. Abate
The Biomolecule Sequencer Project: Nanopore Sequencing as a Dual-Use Technology for Crew Health and Astrobiology Investigations, K. K. John, D. S. Botkin, A. S. Burton, S. L. Castro-Wallace, J. D. Chaput, J. P. Dworkin, Niles Lehman, M. L. Lupisella, C. E. Mason, D. J. Smith, S. Stahl, and C. Switzer
The Intervening Sequence of Coxiella burnetii: Characterization and Evolution, Indu Warrier, Mathias C. Walter, Dimitrios Frangoulidis, Rahul Raghavan, Linda D. Hicks, and Michael F. Minnick
The Mangroves of Ambanja and Ambaro Bays, Northwest Madagascar: Historical Dynamics, Current Status and Deforestation Mitigation Strategy, Trevor Gareth Jones, Harifidy Rakoto Ratsimba, Aude Carro, and Lalao Ravaoarinorotsihoarana
Submissions from 2015
Effects of Sex and Mycorrhizal Fungi on Gas Exchange in the Dioecious Salt Marsh Grass Distichlis Spicata, Kassandra Reuss-Schmidt, Todd N. Rosenstiel, Sally R. Rogers, Allie G. Simpson, and Sarah M. Eppley
Isolation of Diverse Members of the Aquificales from Geothermal Springs in Tengchong, China, Brian P. Hedlund, Anna-Louise Reysenbach, Liuquin Huang, John C. Ong, Zizhang Liu, Jeremy A. Dodsworth, Reham Ahmed, Amanda J. Williams, Brandon R. Briggs, Yitai Liu, Weiguo Hou, and Hailiang Dong
Submissions from 2014
Report on the Workshop for Life Detection in Samples from Mars, Gerhard Kminek, Catherine Conley, Carlton C. Allen, Douglas H. Bartlett, David W. Beaty, Liane G. Benning, Rohit Bhatia, Penelope J. Boston, Caroline Duchaine, Jack D. Farmer, George J. Flynn, Daniel P. Glavin, Yuri Gorby, John E. Hallsworth, Rakesh Mogul, Duane Moser, P. Buford Price, Ruediger Pukall, David Fernandez-Remolar, Caroline L. Smith, Kenneth M. Stedman, Andrew Steele, Ramunas Stepanauskas, Henry Sun, Jorge L. Vago, Mary A. Voytek, Paul S. Weiss, and Frances Westfall
Serial Transfer Can Aid the Evolution of Autocatalytic Sets, Wim Hordijk, Nilesh Vaidya, and Niles Lehman
Structural Insights into the Architecture of the Hyperthermophilic Fusellovirus SSV1, Kenneth M. Stedman, Melissa DeYoung, Mitul Saha, Michael B. Sherman, and Marc C. Morais
Submissions from 2013
Avoidance of Apoptosis in Embryonic Cells of the Annual Killifish Austrofundulus limnaeus Exposed to Anoxia, Camie Lynn Meller and Jason E. Podrabsky
Insights into Archaeal Evolution and Symbiosis from the Genomes of a Nanoarchaeon and its Inferred Crenarchaeal Host from Obsidian Pool, Yellowstone National Park, Mircea Podar, Kira S. Makarova, David E. Graham, Yuri L. Wolf, Eugene V. Koonin, and Anna-Louise Reysenbach
Mesoaciditoga lauensis gen. nov., sp. nov., a moderate thermoacidophilic Thermotogales from a deep-sea hydrothermal vent, Anna-Louise Reysenbach, Yitai Liu, Annie R. Lindgren, Issac D. Wagner, Christine Demko Sislak, Anchelique Mets, and Stefan Schouten
Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages, Cristina Takacs-Vesbach, William P. Inskeep, Zackary J. Jay, Markus J. Herrgard, Douglas B. Rusch, Susannah G. Tringe, Mark A. Kozubal, Natsuko Hamamura, Richard E. Macur, Bruce W. Fouke, Anna-Louise Reysenbach, Timothy R. McDermott, Ryan deM. Jennings, Nicolas W. Hengartner, and Gary Xie
Rapid Change in Shallow Water Fish Species Composition in an Historically Stable Antarctic Environment, Bradley A. Buckley
Submissions from 2012
A Genetic Study of SSV1, the Prototypical Fusellovirus, Eric Iverson and Kenneth M. Stedman
A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment, Annie R. Lindgren, Molly S. Pankey, Frederick G. Hochberg, and Todd H. Oakley
A Novel Virus Genome Discovered in an Extreme Environment Suggests Recombination Between Unrelated Groups of RNA and DNA Viruses, Geoffrey S. Diemer and Kenneth M. Stedman
Cephalopod Genomics: A Plan of Strategies and Organization, Caroline B. Albertin, Laure Bonnaud, C. Titus Brown, Wendy J. Crookes-Goodson, Rute R. da Fonseca, Carlo Di Cristo, Brian P. Dilkes, Eric Edsinger-Gonzales, Robert M. Freeman Jr., Roger T. Hanlon, Kristen M. Koenig, Annie R. Lindgren, Mark Q. Martindale, Patrick Minx, Leonid L. Moroz, Marie-Therese Nödl, Spencer V. Nyholm, Atsushi Ogura, Judit R. Pungor, Joshua J. C. Rosenthal, Erich M. Schwarz, Shuichi Shigeno, Jan M. Strugnell, Tim Wollesen, Guojie Zhang, and Clifton W. Ragsdale
Differential Virus Host-Ranges of the Fuselloviridae of Hyperthermophilic Archaea: Implications for Evolution in Extreme Environments, Ruben M. Ceballos, Caleb D. Marceau, Joshua O. Marceau, Steven Morris, Adam J. Clore, and Kenneth M. Stedman
Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny, Todd H. Oakley, Joanna M. Wolfe, Annie R. Lindgren, and Alexander K. Zaharoff
Sub-Antarctic and High Antarctic Notothenioid Fishes: Ecology and Adaptational Biology Revealed by the ICEFISH 2004 Cruise of RVIB Nathaniel B. Palmer, H. William Detrich III, Bradley A. Buckley, Daniel F. Doolittle, Christopher D. Jones, and Susanne J. Lockhart
The Chemical Origin of Behavior is Rooted in Abiogenesis, Brian C. Larson, R. Paul Jensen, and Niles Lehman
Volatilizable Biogenic Organic Compounds (VBOCs) with two dimensional Gas Chromatography-Time of Flight Mass Spectrometry (GC × GC-TOFMS): sampling methods, VBOC complexity, and chromatographic retention data, James F. Pankow, Wentai Luo, Andrea Natalie Melnychenko, Kelley Barsanti, Lorne M. Isabelle, C. Chen, Alex B. Guenther, and Todd N. Rosenstiel
Submissions from 2011
Growth Phase-Dependent Gene Regulation in Vivo in Sulfolobus Solfataricus, Melissa DeYoung, Michelle Thayer, John Van der Oost, and Kenneth M. Stedman
Limits to Sexual Reproduction in Geothermal Bryophytes, Sarah M. Eppley, Todd N. Rosenstiel, Camille Brianne Graves, and Estefanía Llaneza García
Submissions from 2010
Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function, William P. Inskeep, Douglas B. Rusch, Zackary J. Jay, Markus J. Herrgard, Mark A. Kozubal, Toby H. Richardson, Richard E. Macur, Natsuko Hamamura, Ryan deM. Jennings, Bruce W. Fouke, Anna-Louise Reysenbach, Frank Roberto, Mark Young, Ariel Schwartz, Eric S. Boyd, Jonathan H. Badger, Eric J. Mathur, Alice C. Ortmann, Mary Bateson, and Gill Geesey
Quasispecies-Like Behavior Observed in Catalytic RNA Populations Evolving in a Test Tube, Carolina Diaz Arenas and Niles Lehman
The Isolation of Viruses Infecting Archaea, Kenneth M. Stedman, Kate Porter, and Mike L. Dyall-Smith
Thermocrinis minervae sp. nov., A Hydrogen and Sulfur-oxidizing, Thermophilic Member of the Aquificales from a Costa Rican Terrestrial Hot Spring, Sara L. Caldwell, Yitai Liu, Isabel Ferrera, Terry Beveridge, and Anna-Louise Reysenbach
Virus Silicification under Simulated Hot Spring Conditions, James R. Laidler and Kenneth M. Stedman
Submissions from 2009
Rearrangement of the RNA Polymerase Subunit H and the Lower Jaw in Archaeal Elongation Complexes, Sebastian Grünberg, Christoph Reich, Mirijam E. Zeller, Michael S. Bartlett, and Michael Thomm
Submissions from 2008
An Embarrassment of Riches: The Enzymology of RNA Modification, Dirk Iwata-Reuyl