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Submissions from 2017

Colonization by Nitrogen-fixing Frankia Bacteria Causes Short-Term Increases in Herbivore Susceptibility in Red Alder (Alnus Rubra) Seedlings, Daniel J. Ballhorn, Jacob D. Elias, M. A. Balkan, Rachel F. Foredyce, and Peter G. Kennedy

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Females are the Brighter Sex: Differences in External Fluorescence across Sexes and Life Stages of a Crab Spider, Erin E. Brandt and Susan E. Masta

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Rolling Circle Mutagenesis of GST-mCherry to Understand Mutation, Gene Expression, and Regulation, Jessica Cole, Amanda Ferguson, Verónica A. Segarra, and Susan Walsh

Patterns of Stress Responses Shift During Seasonal Life-History Transitions: An Analysis Comparing Baseline, Maximal and Integrated Corticosterone in Female Red-Sided Garter Snakes (Thamnophis sirtalis parietalis), Catherine A. Dayger and Deborah I. Lutterschmidt

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Editorial: Genetics, Genomics and –Omics of Thermophiles, Kian Mau Goh, Kok-Gan Chan, Rajesh Kumar Sani, Edgardo Ruben Donati, and Anna-Louise Reysenbach

Extreme Mutation Tolerance: Nearly Half of the Archaeal Fusellovirus Sulfolobus Spindle-Shaped Virus 1 Genes Are Not Required for Virus Function, Including the Minor Capsid Protein Gene vp3, Eric Iverson, David A. Goodman, Madeline E. Gorchels, and Kenneth M. Stedman

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PCR-Activated Cell Sorting as a General, Cultivation-Free Method for High-Throughput Identification and Enrichment of Virus Hosts, Shaun W. Lim, Shea T. Lance, Kenneth M. Stedman, and Adam R. Abate

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Accumulation and Expression of Multiple Antibiotic Resistance Genes in Arcobacter Cryaerophilus that Thrives in Sewage, Jess A. Millar and Rahul Raghavan

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Horizontally Acquired Biosynthesis Genes Boost Coxiella burnetii's Physiology, Abraham S. Moses, Jess A. Millar, Matteo Bonazzi, Paul A. Beare, and Rahul Raghavan

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Assessing the Potential of Land Use Modification to Mitigate Ambient NO2 and Its Consequences for Respiratory Health, Meenakshi Rao, Linda A. George, Vivek Shandas, and Todd N. Rosenstiel

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Winter Diet of Bobolink, a Long-Distance Migratory Grassland Bird, Inferred from Feather Isotopes, Rosalind B. Renfrew, Jason M. Hill, Daniel H. Kim, Christopher Romanek, and Noah G. Perlut

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Transcriptomic Analysis of Maternally Provisioned Cues for Phenotypic Plasticity in the Annual Killifish, Austrofundulus limnaeus, Amie L. Romney and Jason E. Podrabsky

Epigenetic Regulation of Alternative Developmental Trajectories, Arnie Lynn T. Romney and Jason E. Podrabsky

Cephalopod Biodiversity in the Vicinity of Bear Seamount, Western North Atlantic Based on Exploratory Trawling From 2000 to 2014, Elizabeth K. Shea, Heather Judkins, Michelle D. Staudinger, and Valerie H. Dimkovikj

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Each to Their Own CURE: Faculty Who Teach Course-Based Undergraduate Research Experiences Report Why You Too Should Teach a CURE, Erin E. Shortlidge, Gita Bangera, and Sara Brownell

Passive Warming Reduces Stress and Shifts Reproductive Effort in the Antarctic Moss, Polytrichastrum alpinum, Erin E. Shortlidge, Sarah M. Eppley, Hans Kohler, Todd N. Rosenstiel, Gustavo E. Zúñiga, and Angélica Casanova-Katny

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Is Biomass a Reliable Estimate of Plant Fitness?, Brett S. Younginger, Dagmara Sirova, Mitchell B. Cruzan, and Daniel J. Ballhorn

Submissions from 2016

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Bayesian Methods for Comparing Species Physiological and Ecological Response Curves, Michael B. Ashcroft, Angélica Casanova-Katny, Kerrie Mengersen, Todd N. Rosenstiel, Johanna D. Turnbull, Jane Wasley, Melinda J. Waterman, Gustavo E. Zúñiga, and Sharon A. Robinson

Herbivore Damage Induces a Transgenerational Increase of Cyanogenesis in Wild Lima Bean (Phaseolus lunatus), Daniel J. Ballhorn, Stefanie Kautz, and Jessie May Lauman

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Coevolution of Cyanogenic Bamboos and Bamboo Lemurs on Madagascar, Daniel J. Ballhorn, Fanny Patrika Rakotoarivelo, and Stefanie Kautz

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Friend or Foe—Light Availability Determines the Relationship between Mycorrhizal Fungi, Rhizobia and Lima Bean (Phaseolus lunatus L.), Daniel J. Ballhorn, Martin Schädler, Jacob D. Elias, Jess A. Millar, and Stefanie Kautz

Spatial Patterns of Extra-pair Paternity for Spotted Towhees Pipilo Maculatus in Urban Parks, Sarah Bartos Smith, Jenny E. McKay, Michael T. Murphy, and Deborah A. Duffield

Demography of a Ground Nesting Bird in an Urban System: Are Populations Self-Sustaining?, Sarah Bartos Smith, Jenny E. McKay, Jennifer K. Richardson, Amy A. Shipley, and Michael T. Murphy

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Reproductive Output of Mosses Under Experimental Warming on Fildes Peninsula, King George Island, Maritime Antarctica, Angélica Casanova-Katny, G. A. Torres-Mellado, and Sarah M. Eppley

Paternal Behaviour in a Socially Monogamous but Sexually Promiscuous Passerine Bird, Christopher M. Chutter, Lucas J. Redmond, Nathan W. Cooper, Amy C. Dolan, Deborah A. Duffield, and Michael T. Murphy

Postpollination Discrimination Between Self and Outcross Pollen Covaries with the Mating System of a Self-Compatible Flowering Plant, Mitchell B. Cruzan and Spencer C. H. Barrett

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Small Unmanned Aerial Vehicles (Micro-UAVs, Drones) in Plant Ecology, Mitchell B. Cruzan, Ben G. Weinstein, Monica R. Grasty, Brendan F. Kohrn, Elizabeth C. Hendrickson, Tina M. Arredondo, and Pamela G. Thompson

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Seasonal and Sex Differences in Responsiveness to Adrenocorticotropic Hormone Contribute to Stress Response Plasticity in Red-Sided Garter Snakes (Thamnophis Sirtalis Parietalis), Catherine A. Dayger and Deborah I. Lutterschmidt

Modeling Microvirus Capsid Protein Evolution Utilizing Metagenomic Sequence Data, Geoffrey S. Diemer and Kenneth M. Stedman

Anchored Pseudo-De Novo Assembly of Human Genomes Identifies Extensive Sequence Variation From Unmapped Sequence Reads, Joshua Faber-Hammond and Kim Brown

Pseudo-De Novo Assembly and Analysis of Unmapped Genome Sequence Reads in Wild Zebrafish Reveal Novel Gene Content, Joshua Faber-Hammond and Kim Brown

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A Francisella-Like Endosymbiont in the Gulf Coast Tick Evolved From a Mammalian Pathogen, Jonathan G. Gerhart, Abraham S. Moses, and Rahul Raghavan

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Is Protection Against Florivory Consistent with the Optimal Defense Hypothesis?, Adrienne L. Godschalx, Lauren Stady, Benjamin Watzig, and Daniel J. Ballhorn

Mechanisms of Animal Diapause: Recent Developments from Nematodes, Crustaceans, Insects, and Fish, Steven C. Hand, David L. Denlinger, Jason E. Podrabsky, and Richard Roy

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Recumbence Behavior in Zoo Elephants: Determination of Patterns and Frequency of Recumbent Rest and Associated Environmental and Social Factors, Matthew Robert Holdgate, Cheryl L. Meehan, Jennifer N. Hogan, Lance J. Miller, Jeff Rushen, Anne-Marie de Passillé, Josesph Soltis, Jeff Andrews, and David J. Shepherdson

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Walking Behavior of Zoo Elephants: Associations between GPS-Measured Daily Walking Distances and Environmental Factors, Social Factors, and Welfare Indicators, Matthew Robert Holdgate, Cheryl L. Meehan, Jennifer N. Hogan, Lance J. Miller, Josesph Soltis, Jeff Andrews, and David J. Shepherdson

Intermediate Filament Aggregates Cause Mitochondrial Dysmotility and Increase Energy Demands in Giant Axonal Neuropathy, Eitan Israeli, Dilyan I. Dryanovski, Paul T. Schumacker, Navdeep S. Chandel, Jeffrey D. Singer, Jean-Pierre Julien, Robert D. Goldman, and Puneet Opal

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Peering Below the Diffraction Limit: Robust and Specific Sorting of Viruses with Flow Cytometry, Shea T. Lance, David J. Sukovich, Kenneth M. Stedman, and Adam R. Abate

Life on the Edge—the Biology of Organisms Inhabiting Extreme Environments: An Introduction to the Symposium, Annie R. Lindgren, Bradley A. Buckley, Sarah M. Eppley, Anna-Louise Reysenbach, Kenneth M. Stedman, and Josiah T. Wagner

Rapid Purging of Genetic Load in a Metapopulation and Consequences for Range Expansion in an Invasive Plant, Gina L. Marchini, Nena Cole Sherlock, Alisa P. Ramakrishnan, David M. Rosenthal, and Mitchell B. Cruzan

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Cho Endonuclease Functions During DNA Interstrand Crosslink Repair in Escherichia coli, Anthonige Vidya Perera, James Brian Mendenhall, Charmain T. Courcelle, and Justin Courcelle

Hypoxia and Anoxia Tolerance in the Annual Killifish Austrofundulus Limnaeus, Jason E. Podrabsky and Natalie E. Wilson

Frequency of Extra-Pair Paternity in Scissor-Tailed Flycatchers (Tyrannus forficatus) and Other Suboscines: Are Oscines and Suboscines Different?, Diane V. Roeder, Michael S. Husak, and Michael T. Murphy

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Paternal Mitochondrial Transmission in Intra-Species Caenorhabditis briggsae Hybrids, Joseph A. Ross, Dana K. Howe, Anna Luella Coleman-Hulbert, Dee R. Denver, and Suzanne Estes

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Mitochondrial DNA Sequence and Lack of Response to Anoxia in the Annual Killifish Austrofundulus limnaeus, Josiah T. Wagner, Florisela H. Chavez, and Jason E. Podrabsky

A Phage Display-Selected Peptide Inhibitor o fAgrobacterium Vitis Polygalacturonase, Jeremy G. Warren, George W. Kasun, Takara Leonard, and Bruce C. Kirkpatrick

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The Intervening Sequence of Coxiella burnetii: Characterization and Evolution, Indu Warrier, Mathias C. Walter, Dimitrios Frangoulidis, Rahul Raghavan, Linda D. Hicks, and Michael F. Minnick

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Paths of Heritable Mitochondrial DNA Mutation and Heteroplasmy in Reference and Gas-1 Strains of Caenorhabditis Elegans, Riana I. Wernick, Suzanne Estes, Dana K. Howe, and Dee R. Denver

Biological Rhythms: Melatonin Shapes the Space-Time Continuum of Social Communication, Walter Wilczynski and Deborah I. Lutterschmidt

Common Mycelial Networks Impact Competition in an Invasive Grass, Rachael Workman and Mitchell Cruzan

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Genomics-Informed Isolation and Characterization of a Symbiotic Nanoarchaeota System from a Terrestrial Geothermal Environment, Louie Wurch, Richard J. Giannone, Bernard S. Belisle, Carolyn Swift, Sagar Utturkar, Robert L. Hettich, Anna-Louise Reysenbach, and Mircea Podar

Degradation by Cullin 3 and Effect on WNK Kinases Suggest a Role of KLHL2 in the Pathogenesis of Familial Hyperkalemic Hypertension, Chong Zhang, Nicholas P. Meermeier, Andrew S. Terker, Katharina I. Blankenstein, Jeffrey D. Singer, Juliette Hadchouel, David Ellison, and Chao-Ling Yang

Submissions from 2015

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RecBCD is required to Complete Chromosomal Replication: Implications for Double- Strand Break Frequencies and Repair Mechanisms, Justin Courcelle, Brian M. Wendel, Dena D. Livingstone, and Charmain T. Courcelle

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Saccular Transcriptome Profiles of the Seasonal Breeding Plainfin Midshipman Fish (Porichthys notatus), a Teleost with Divergent Sexual Phenotypes, Joshua J. Faber-Hammond, Manoj P. Samanta, Elizabeth A. Whitchurch, Dustin Manning, Joseph A. Sisneros, and Allison B. Coffin

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Isolation of Diverse Members of the Aquificales from Geothermal Springs in Tengchong, China, Brian P. Hedlund, Anna-Louise Reysenbach, Liuquin Huang, John C. Ong, Zizhang Liu, Jeremy A. Dodsworth, Reham Ahmed, Amanda J. Williams, Brandon R. Briggs, Yitai Liu, Weiguo Hou, and Hailiang Dong

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Increased Harbor Porpoise Mortality in the Pacific Northwest, USA: Understanding When Higher Levels May be Normal, Jessica L. Higgins, Stephen A. Raverty, Stephanie A. Norman, John Calambokidis, Joseph K. Gaydos, Deborah A. Duffield, Dyanna M. Lambourn, James M. Rice, Brad Hanson, Kristin Wilkinson, Steven J. Jeffries, Brent Norberg, and Lynne Barre

Desert Environments, Stanley D. Hillyard, Jason E. Podrabsky, and Frank van Breukelen

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Free Mate Choice Enhances Conservation Breeding in the Endangered Giant Panda, Meghan S. Martin-Wintle, David J. Shepherdson, Guiquan Zhang, Hemin Zhang, Desheng Li, Xiaoping Zhou, Rengui Li, and Ronald R. Swaisgood

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Rapid and Repeatable Shifts in Life-History Timing of Rhagoletis pomonella (Diptera: Tephritidae) Following Colonization of Novel Host Plants in the Pacific Northwestern United States, Monte Mattsson, Glen R. Hood, Jeffery L. Feder, and Luis A. Ruedas

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Coxiella burnetii and Leishmania Mexicana Residing Within Similar Parasitophorous Vacuoles Elicit Disparate Host Responses, Jess A. Millar, Raquel Valdés, Fenil Kacharia, Scott M. Landfear, Eric D. Cambronne, Rahul Raghavan, Lynn Soong, and Emilio Luis Malchiodi

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Selfish Mitochondrial DNA Proliferates and Diversifies in Small, but not Large, Experimental Populations of Caenorhabditis briggsae, Wendy S. Phillips, Anna Luella Coleman-Hulbert, Emily S. Weiss, Dana K. Howe, Sita Ping, Riana I. Wernick, Suzanne Estes, and Dee R. Denver

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Physiological Strategies During Animal Diapause: Lessons from Brine Shrimp and Annual Killifish., Jason E. Podrabsky and Steven C. Hand

Tolerance of Environmental Stress, Jason E. Podrabsky, Claire L. Riggs, and Josiah Tad Wagner

Alternate Developmental Pathways, Jason E. Podrabsky, Amie L. Romney, and Kristin M. Culpepper

Temporary Environments, Matej Polacik and Jason E. Podrabsky

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Reducing the Negative Human-Health Impacts of Bioenergy Crop Emissions through Region-Specific Crop Selection, William Christian Porter, Todd N. Rosenstiel, Alex Guenther, Jean-Francois Lamarque, and Kelley Barsanti

Ultrasonic Bone Assessment in Tursiops Truncatus: A Proposed Means for Monitoring Marine Ecosystem Health, James Powell, Gangming Luo, and Jonathan J. Kaufman

Ultrasonic Bone Assessment in Tursiops Truncatus: A Proposed Means for Monitoring Marine Ecosystem Health, James Powell, Gangming Luo, and Jonathan J. Kaufman

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Genome Rearrangements Can Make and Break Small RNA Genes, Rahul Raghavan, Fenil R. Kacharia, Jess A. Millar, Christine Demko Sislak, and Howard Ochman

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Effects of Sex and Mycorrhizal Fungi on Gas Exchange in the Dioecious Salt Marsh Grass Distichlis Spicata, Kassandra Reuss-Schmidt, Todd N. Rosenstiel, Sally R. Rogers, Allie G. Simpson, and Sarah M. Eppley

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A Coxiella-Like Endosymbiont Is a PotentialVitamin Source for the Lone Star Tick, Todd A. Smith, Timothy Driscoll, Joseph J. Gillespie, and Rahul Raghavan

Extreme Tolerance and Developmental Buffering of UV-C Induced DNA Damage in Embryos of the Annual Killifish Austrofundulus Limnaeus, Josiah Tad Wagner and Jason E. Podrabsky

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Gene Expression Patterns That Support Novel Developmental Stress Buffering in Embryos of the Annual Killifish Austrofundulus limnaeus, Josiah T. Wagner and Jason E. Podrabsky

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Degradation by Cullin 3 and Effect on WNK Kinases Suggest a Role of KLHL2 in the Pathogenesis of Familial Hyperkalemic Hypertension, Chong Zhang, Nicholas P. Meermeier, Andrew Terker, Katharina I. Blankenstein, Jeffrey D. Singer, Juliette Hadchouel, David Ellison, and Chao-Ling Yang

Submissions from 2014

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Experimental Analysis of Nest-Site Choice and its Relationship to Nest Success in an Open-Cup–Nesting Passerine, Sarah Cancellieri and Michael T. Murphy

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Novel Computational Approaches Characterizing Knee Physiotherapy, Wangdo Kim, Antonio P. Veloso, Duarte Araújo, and Sean S. Kohles

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Report on the Workshop for Life Detection in Samples from Mars, Gerhard Kminek, Catherine Conley, Carlton C. Allen, Douglas H. Bartlett, David W. Beaty, Liane G. Benning, Rohit Bhartia, Penelope J. Boston, Caroline Duchaine, Jack D. Farmer, George J. Flynn, Daniel P. Glavin, Yuri Gorby, John E. Hallsworth, Rakesh Mogul, Duane Moser, P. Buford Price, Ruediger Pukall, David Fernandez-Remolar, Caroline L. Smith, Kenneth M. Stedman, Andrew Steele, Ramunas Stepanauskas, Henry Sun, Jorge L. Vago, Mary A. Voytek, Paul S. Weiss, and Frances Westfall

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Biomechanical Analysis of Concealed Pack Load Influences on Terrorist Gait Signatures Derived from Gröbner Basis Theory, Sean S. Kohles, Anum Barki, Kimberly D. Kendricks, and Ronald F. Tuttle

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The Influence of Vitamin D Metabolism on Gene Expression, Matrix Production and Mineralization During Osteoprecursor Cell-Based Bone Development, Shelley S. Mason, Sean S. Kohles, Shelley R. Winn, and Randy D. Zelick

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Antibacterial Gene Transfer Across the Tree of Life, Jason A. Metcalf, Lisa J. Funkhouser-Jones, Kristen A. Brileya, Anna-Louise Reysenbach, and Seth R. Bordenstein

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Endogenous ROS Levels in C. Elegans Under Exogenous Stress Support Revision of Oxidative Stress Theory of Life-History Tradeoffs, Samson W. Smith, Leigh C. Latta IV, Dee R. Denver, and Suzanne Estes

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Using Phylogenetically-Informed Annotation (PIA) to search for light-interacting Genes in Transcriptomes from Non-Model Organisms, Daniel L. Speiser, Molly S. Pankey, Alexander K. Zaharoff, Barbara A. Battelle, Heather D. Bracken-Grissom, Jesse W. Breinholt, Seth M. Bybee, Thomas W. Cronin, Anders Garm, Annie R. Lindgren, Nipam H. Patel, Megan L. Porter, Meredith E. Protas, Ajna S. Rivera, Jeanne M. Serb, Kirk S. Zigler, Keith A. Crandall, and Todd H. Oakley

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Structural Insights into the Architecture of the Hyperthermophilic Fusellovirus SSV1, Kenneth M. Stedman, Melissa DeYoung, Mitul Saha, Michael B. Sherman, and Marc C. Morais

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Variation in Sex Allocation and Floral Morphology in an Expanding Distylous Plant Hybrid Complex, Jennifer Rhode Ward, M. Leigh Cowart, Julie Clifford, Mieko Camp, and Mitchell B. Cruzan

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Identification of Novel Small RNAs and Characterization of the 6S RNA of Coxiella burnetii, Indu Warrier, Linda D. Hicks, James M. Battisti, Rahul Raghavan, and Michael F. Minnick

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Novel Cul3 Binding Proteins Function to Remodel E3 Ligase Complexes, Wananit Wimuttisuk, Mark West, Brittney Davidge, Kebing Yu, Arthur Salomon, and Jeffrey D. Singer

Submissions from 2013

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Distance and Sex Determine Host Plant Choice by Herbivorous Beetles, Daniel J. Ballhorn, Stefanie Kautz, and Martin Heil

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Taxis Toward Hydrogen Gas by Methanococcus Maripaludis, Kristen A. Brileya, James M. Connolly, Carey Downey, Robin Gerlach, and Matthew W. Fields

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Can Long-Range PCR Be Used to Amplify Genetically Divergent Mitochondrial Genomes for Comparative Phylogenetics? A Case Study within Spiders (Arthropoda: Araneae), Andrew G. Briscoe, Sara Goodacre, Susan E. Masta, Martin I. Taylor, Miquel A. Arnedo, David Penny, John Kenny, and Simon Creer

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Rapid Change in Shallow Water Fish Species Composition in an Historically Stable Antarctic Environment, Bradley A. Buckley

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Field Evaluation of Arbuscular Mycorrhizal Fungal Colonization in Bacillus thuringiensis Toxin-Expressing (Bt) and Non-Bt Maize, Tanya E. Cheeke, Mitchell B. Cruzan, and Todd N. Rosenstiel

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Cross-Species Array Comparative Genomic Hybridization Identifies Novel Oncogenic Events in Zebrafish and Human Embryonal Rhabdomyosarcoma, Eleanor Y. Chen, Kimberly P. Dobrinski, Kim H. Brown, Ryan Clagg, Elena Edelman, Myron S. Ignatius, Jin Yun Helen Chen, Jillian Brockmann, G. Petur Nielsen, Sridhar Ramaswamy, Charles Keller, Charles Lee, and David M. Langenau

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Sequencing and De Novo Transcriptome Assembly of Brachypodium sylvaticum (Poaceae), Samuel E. Fox, Justin Preece, Jeffrey A. Kimbrel, Gina L. Marchini, Abigail Sage, Ken Youens-Clark, Mitchell B. Cruzan, and Pankaj Jaiswal

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Migration Timing and Wintering Areas of Three Species of Flycatchers (Tyrannus) Breeding in the Great Plains of North America, Alex E. Jahn, Victor R. Cueto, James W. Fox, Michael S. Husak, Daniel H. Kim, Diane V. Landoll, Jesús Pinto Ledezma, Heather K. LePage, Douglas J. Levey, Michael T. Murphy, and Rosalind B. Renfrew

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Evolution of a Higher Intracellular Oxidizing Environment in Caenorhabditis elegans under Relaxed Selection, Joanna Joyner-Matos, Kiley A. Hicks, Dustin Cousins, Michelle Keller, Dee R. Denver, Charles F. Baer, and Suzanne Estes

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Reversible Inactivation and Desiccation Tolerance of Silicified Viruses, James R. Laidler, Jessica A. Shugart, Sherry L. Cady, Keith S. Bahjat, and Kenneth M. Stedman

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Extrahepatic 25-Hydroxylation of Vitamin D3 in an Engineered Osteoblast Precursor Cell Line Exploring the Influence on Cellular Proliferation and Matrix Maturation during Bone Development, Shelley S. Mason, Sean S. Kohles, Shelley R. Winn, and Randy D. Zelick

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Avoidance of Apoptosis in Embryonic Cells of the Annual Killifish Austrofundulus limnaeus Exposed to Anoxia, Camie Lynn Meller and Jason E. Podrabsky

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Insights into Archaeal Evolution and Symbiosis from the Genomes of a Nanoarchaeon and its Inferred Crenarchaeal Host from Obsidian Pool, Yellowstone National Park, Mircea Podar, Kira S. Makarova, David E. Graham, Yuri L. Wolf, Eugene V. Koonin, and Anna-Louise Reysenbach

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Mesoaciditoga lauensis gen. nov., sp. nov., a moderate thermoacidophilic Thermotogales from a deep-sea hydrothermal vent, Anna-Louise Reysenbach, Yitai Liu, Annie R. Lindgren, Issac D. Wagner, Christine Demko Sislak, Anchelique Mets, and Stefan Schouten