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Submissions from 2024

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Oil Identification of Harp Seal and other select marine mammals, Meghan Pinedo, Deborah A. Duffield, Dalin N. D’Alessandro, Erin R. Price, and Edgard O. Espinoza

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A Genus in the Bacterial Phylum Aquificota appears to be endemic to Aotearoa-New Zealand, Jean F. Power, Carlo R. Carere, Holly E. Welford, Daniel T. Hudson, Kevin C. Lee, John W. Moreau, Anna-Louise Reysenbach, Thijs J.G. Ettema, and multiple additional authors

Submissions from 2023

Woodpeckers in the City: Abundances Are Highest in Large Green Spaces with Complex Understories, Adam Baz and Michael T. Murphy

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Novel Viruses of the Family Partitiviridae Discovered in Saccharomyces cerevisiae, Angela M. Crabtree, Ignacio de la Higuera, Kenneth Stedman, and multiple additional authors

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Paternity patterns in a long-term resident bottlenose dolphin community, Debbie Duffield and Randall Wells

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Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes, Laura Eme, Daniel Tamarit, Eva F. Caceres, Courtney W. Stairs, Valerie De Anda, Max E. Schön, Kiley W. Seitz, Nina Dombrowski, Anna-Louise Reysenbach, and multiple additional authors

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Evolutionary Codependency: Insights into the Mitonuclear interaction landscape from experimental and wild Caenorhabditis nematodes, Suzanne Estes, Zachary P. Dietz, Vaishali Katju, and Ulfar Bergthorsson

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Diverse and Variable Community Structure of Picophytoplankton across the Laurentian Great Lakes, John Gale, Carey P. Sweeney, Sarah Paver, Maureen L. Coleman, and Anne W. Thompson

Nitrogen-Fixing Rhizobia Affect Multitrophic Interactions in the Field, Adrienne L. L. Godschalx, Aramee C. C. Diethelm, Stefanie Kautz, and Daniel J. J. Ballhorn

Graduate Teaching Assistants Impact Student Motivation and Engagement in Course-Based Undergraduate Research Experiences, Emma Crystal Goodwin, Jessica R. Cary, Vivian D. Phan, Hayley Therrien, and Erin Elizabeth Shortlidge

A Review of Bats of the Genus Pseudoromicia (chiroptera: Vespertilionidae) with the Description of a New Species, Amanda L. Grunwald, Terrence C. Demos, Yvette Ngueagni, Martin N. Tchamba, Ara Monadjem, Paul W. Webala, Julian C. Kerbis Peterhans, Bruce D. Patterson, and Luis A. Ruedas

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Chi Sequences Switch the RecBCD Helicase–Nuclease Complex from Degradative to Replicative Modes During the Completion of DNA Replication, Avery E. Jehru, Charmain Courcelle, Justin Courcelle, and multiple additional authors

Behavior Reference Intervals and Activity Budgets of Bottlenose Dolphins in Accredited Zoos and Aquariums, Lisa K. Lauderdale, Jill D. Mellen, Michael T. Walsh, Douglas A. Granger, and Lance J. Miller

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Environmental Enrichment Factors Associated with the Activity Level of Bottlenose Dolphins under Professional Care, Lisa K. Lauderdale, K. Alex Shorter, Joaquin Gabaldon, Jill D. Mellen, and multiple additional authors

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Methanocaldococcus Lauensis sp. nov., a Novel Deep-sea Hydrothermal Vent Hyperthermophilic Methanogen, Stéphane L'Haridon, Steven Goulaouic, Emily St John, Stephanie Fouteau, and Anna-Louise Reysenbach

Aberrant White Plumage in a Broad-Billed Motmot (electron Platyrhynchum) in Costa Rica, Jose Manuel Mora, Lucia I. Lopez, and Elian Villalobos Alvarado

Updated List of the Mammals of Costa Rica, with Notes on Recent Taxonomic Changes, Jose M. Mora and Luis A. Ruedas

Allosaurus Was Predominantly a Scavenger, Cameron C. Pahl and Luis A. Ruedas

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Big boned: How Fat Storage and other Adaptations Influenced large theropod foraging ecology, Cameron Pahl and Luis A. Ruedas

Crispr-Influenced Symbiosis, Anna-Louise Reysenbach and Michael P. Terns

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Germ Cell Recovery, Cryopreservation and Transplantation in the California white sturgeon, Acipenser transmontanus, Amie L. Romney, Danielle M. Myers, Fatima R. Martin, Tawney N. Scanlan, and Stuart A. Meyers

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Predation of Lepidophyma flavimaculatum (Squamata: Xantusiidae) by Basiliscus plumifrons (Squamata: Corytophanidae), Mauricio Quirós Rosales, José Manuel Mora, and Randy Alvarado

A Propaedeutic to the Taxonomy of the Eastern Cottontail Rabbit (lagomorpha: Leporidae: Sylvilagus Floridanus) from Central America., Luis A. Ruedas, Lucia I. Lopez, and Jose M. Mora

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Embryonic Development of Natural Annual Killifish populations of the genus Austrolebias: Evolutionary parallelism and the role of environment, Hellen Schlueb, Daniel Blanco, Daniel García, and Jason Podrabsky

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Drivers of Plankton Community Structure in Intermittent and Continuous Coastal upwelling systems–from microbes and microscale in-situ imaging to large scale patterns, Moritz Schmid, Su Sponaugle, Anne W. Thompson, Kelly T. Sutherland, and Robert Cowen

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Computational Analysis of Plasma Lipidomics from Mice Fed Standard Chow and Ketogenic Diet, Amy L. Seufert, James W. Hickman, Jaewoo Choi, and Brooke A. Napier

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A New Frontier for Fat: Dietary Palmitic Acid induces innate immune memory, Amy L. Seufert and Brooke A. Napier

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Preparing Teaching Assistants to Facilitate Course-based Undergraduate Research Experiences (CUREs) in the Biological Sciences: A Call to Action, Erin Shortlidge, Amie M. Kern, Emma Goodwin, and Jeffrey T. Olimpo

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Selective and Differential Feeding on Marine Prokaryotes by Mucous Mesh Feeders, Carey P. Sweeney, Kelly R. Sutherland, and Anne Thompson

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Astrovirology: How Viruses Enhance our Understanding of Life in the Universe, Gareth Trubl, Ken Stedman, Kathryn F. Bywaters, Emily E. Matula, Pacifica Sommers, Simon Roux, Nancy Merino, and multiple additional authors

Manganese Transporters Regulate the Resumption of Replication in Hydrogen Peroxide-Stressed Escherichia Coli, Natalie E. E. Wang, Eleanor J. J. Courcelle, Samantha M. Coltman, Raymond L. Spolek, Justin Courcelle, and Charmain Courcelle

Mutations in Acrr and RNA Polymerase Confer High-Level Resistance to Psoralen-Uva Irradiation., Travis K. Worley, Emma A. Weber, Jedidiah D. Acott, Rahul S. Shimpi, Jessica M. Cole, Charmain Courcelle, and Justin Courcelle

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Effects of Heterozygous Deletion of Autism-related gene Cullin-3 in mice, Qiang-qiang Xia, Angela K. Walker, Chenghu Song, Jing Wang, James A. Mobley, Jeffrey Singer, Anju Singh, and Craig M. Powell

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Cullin 3–Mediated Regulation of Intracellular Iron Homeostasis Promotes Thymic Invariant NKT Cell Maturation, Emily L. Yarosz, Ajay Kumar, Jeffrey Singer, and Cheong-Hee Chang

Submissions from 2022

Worldwide Phylogeography of Rough-Toothed Dolphins (steno Bredanensis) Provides Evidence for Subspecies Delimitation, G. Renee Albertson, Alana Alexander, Frederick Archer I, Susana Caballero, Karen K. Martien, Lenaig G. Hemery, Robin W. Baird, Marc Oremus, M. Michael Poole, Deborah A. Duffield, Robert L. Brownell Jr., Dan Kerem, Antonio A. Mignucci-Giannoni, and C. Scott Baker

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Mitonuclear Mismatch is Associated With Increased Male Frequency, Outcrossing, and Male Sperm Size in Experimentally-Evolved C. elegans, Brent W. Bever, Zachary P. Dietz, Jennifer Anne Sullins, Ariana M. Montoya, Ulfar Bergthorsson, Vaishali Katju, and Suzanne Estes

Interactive Effects of Thermal and Salinity Stress Cause Cell Cycle Arrest in the Nile Tilapia., Bradley A. Buckley and Rachel M. Palmer

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An Essential Role for Tungsten in the Ecology and Evolution of a Previously Uncultivated Lineage of Anaerobic, Thermophilic Archaea, Steffen Buessecker, Marike Palmer, Dengxun Lai, Joshua Dimapilis, Xavier Mayali, Damon Mosier, Jian-Yu Jiao, Daniel R. Colman, Anna-Louise Reysenbach, and multiple additional authors

Using Ultraconserved Elements to Unravel Lagomorph Phylogenetic Relationships, Estefania Cano-Sanchez, Flor Rodriguez-Gomez, Luis A. Ruedas, Ken Oyama, Livia Leon-Paniagua, Alicia Mastretta-Yanes, and Alejandro Velazquez

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Species-Specific Interactions in Avian–Bryophyte Dispersal Networks, Matthew Chmielewski and Sarah Eppley

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C3ar Plays Both Sides in Regulating Resistance to Bacterial Infections, Jesse A. Corcoran and Brooke A. Napier

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Recombination Mediator Proteins: Misnomers That Are Key to Understanding the Genomic Instabilities in Cancer, Justin Courcelle, Travis K. Worley, and Charmain Courcelle

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Fitness Effects of Somatic Mutations Accumulating during Vegetative Growth, Mitchell Cruzan, Matthew A. Streisfeld, and Jaime A. Schwoch

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Viruses in Astrobiology, Ignacio de la Higuera and Ester Lázaro

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Urban Green Roofs can Support a Diversity of Parasitoid Wasps, Aramee C. Diethelm and Susan Masta

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Not the Same CURE: Student Experiences in Course-Based Undergraduate Research Experiences Vary by Graduate Teaching Assistant, Emma C. Goodwin, Jessica R. Cary, and Erin E. Shortlidge

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SeqCode: a Nomenclatural Code for Prokaryotes described from Sequence Data, Brian P. Hedlund, Maria Chuvochina, Philip Hugenholtz, Konstantinos T. Konstantinidis, Alison E. Murray, Marike Palmer, Donovan H. Parks, Alexander J. Probst, Anna-Louise Reysenbach, and multiple additional authors

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Phylogenetics and Genetic Variation of Heligmosomoides thomomyos in Western Pocket Gophers (Thomomys spp.), Malorri R. Hughes, Alexandra A. Gibson, Emily R. Wolfe, Cecily D. Bronson, and Deborah A. Duffield

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CRUISE, a Tool for the Detection of Iterons in Circular Rep-Encoding Single-Stranded DNA Viruses, Adam Jones, George W. Kasun, Joel Stover, Kenneth M. Stedman, and Ignacio de la Higuera

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Genome-wide Identification of Novel sRNAs in Streptococcus mutans, Madeline Claire Krieger, Justin Merritt, and Rahul Raghavan

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New Opportunities and Untapped Scientific Potential in the Abyssal Ocean, Jeffrey J. Marlowe, Rika E. Anderson, Anna-Louise Reysenbach, Jeffrey S. Seewald, Timothy M. Shank, Andreas P. Teske, V. Dorsey Wanless, and S. Adam Soule

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Terrestrial Movements, Activity Patterns and Habitat Use by Kinosternon Scorpioides (testudines: Kinosternidae) in Palo Verde National Park, Costa Rica, Jose M. Mora and Franklin E. Castaneda

Differential Response of Migratory Guilds of Birds to Park Area and Urbanization, Michael T. Murphy, David C. Bailey, Nathanael Lichti I, and Laura A. Roberts

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Weather and Climate Change Drive Annual Variation of Reproduction by an Aerial Insectivore, Michael T. Murphy, Lucas J. Redmond, Amy C. Dolan, Nathan W. Cooper, Karen Shepherdson, Christopher Michael Chutter, and Sarah Cancellieri

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The Time is Right for an Antarctic Biorepository Network, Kristin M. O’Brien, Elizabeth L. Crockett, Bryon J. Adams, Charles D. Amsler, Hannah J. Appiah-Madson, Allen Collins, Thomas Desvignes, Sarah Eppley, and multiple additional authors

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Riqueza, abundancia relativa y actividad de los mamíferos de una reserva en restauración en Costa Rica, Pablo Pacheco, Lucia López, Alison Vega Cambronero, and José Manuel Mora

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MicroRNAs Contribute to the Host Response to Coxiella burnetii, Madhur Sachan, Katelynn Brann, Daniel E. Voth, and Rahul Raghavan

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Enriched Dietary Saturated Fatty Acids Induce Trained Immunity via Ceramide Production that Enhances Severity of Endotoxemia and Clearance of Infection, Amy L. Seufert, James W. Hickman, Ste K. Traxler, Rachael M. Peterson, Trent A. Waugh, Sydney L. Lashley, Natalia Shulzhenko, Ruth J. Napier, and Brooke A. Napier

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Conflictos entre humanos y fauna silvestre en una zona de amortiguamiento de San Ramón, Costa Rica, Rebeca Solano-Gómez and José Manuel Mora

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Diversity, Biology, and History of Psilocybin-Containing Fungi: Suggestions for Research and Technological Development, R. C. Van Court, K. W. Meyer, M. S. Wiseman, Daniel J. Ballhorn, K. R. Amses, J. C. Slot, B.T. M. Dentinger, R. Garibay-Orijel, and J. K. Uehling

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Cetacean Strandings in the US Pacific Northwest 2000–2019 Reveal Potential Linkages to Oceanographic Variability, Amanda J. Warlick, Jessica L. Huggins, Dyanna M. Lambourn, Deborah A. Duffield, Dalin Nichole D'Alessandro, James M. Rice, John Calambokidis, M. Bradley Hanson, Joseph K. Gaydos, and multiple additional authors

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Upper temperature limit of larval Pacifc lamprey Entosphenus tridentatus: implications for conservation in a warming climate, Timothy A. Whitesel and Christina T. Uh

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Development of the SeqCode: A Proposed Nomenclatural Code for Uncultivated Prokaryotes with DNA Sequences as Type, William Whitman, Maria Chuvochina, Brian P. Hedlund, Philip Hugenholtz, Konstantinos T. Konstantinidis, Alison E. Murray, Marike Palmer, Donovan H. Parks, Anna-Louise Reysenbach, and multiple additional authors

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Culturable Fungal Endophyte Communities of Primary Successional Plants on Mount St. Helens, WA, USA, Emily R. Wolfe, Robyn Dove, Cassandra Webster, and Daniel J. Ballhorn

Frankia Diversity in Sympatrically Occurring Red Alder (alnus Rubra) and Sitka Alder (alnus Viridis) Trees in an Early Successional Environment, Emily R. Wolfe, Sebastian Singleton, Nathan U. Stewart, Mehmet A. Balkan, and Daniel J. Ballhorn

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Stable Coexistence or Competitive Exclusion? Fern Endophytes Demonstrate rapid Turnover favoring a dominant fungus, Brett Steven Younginger, Nathan U. Stewart, Mehmet Ali Balkan, and Daniel J. Ballhorn

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Global Patterns of Diversity and Metabolism of Microbial Communities in Deep‑sea Hydrothermal vent deposits, Zhichao Zhou, Emily St. John, Karthik Anantharaman, and Anna-Louise Reysenbach

Submissions from 2021

Phylogenomic Analyses Recover a Clade of Large-Bodied Decapodiform Cephalopods., Frank E. Anderson and Annie R. Lindgren

The Role of Functional Diversity and Facilitation in Small-Scale Pollinator Habitat., Kerissa Battle, Catherine E. de Rivera, and Mitchell Cruzan

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Coxiella Burnetii and Related Tick Endosymbionts Evolved from Pathogenic Ancestors, Amanda E. Brenner, Sebastián Muñoz-Leal, Madhur Sachan, Marcelo B. Labruna, and Rahul Raghavan

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Complete Mitochondrial Genome Sequence of the Gulf Coast Tick (Amblyomma maculatum), Amanda E. Brenner and Rahul Raghavan

Variation in Riparian and Stream Assemblages Across the Primary Succession Landscape of Mount St. Helens, USA, Shannon M. Claeson, Carri J. LeRoy, Debra S. Finn, Rosalina H. Stancheva, and Emily R. Wolfe

Sex Chromosome Transformation and the Origin of a Male-Specific X Chromosome in the Creeping Vole., Matthew B. Couger, Scott W. Roy, Noelle Anderson, Landen Gozashti, Stacy Pirro, Lindsay S. Millward, Michelle Kim, Duncan Kilburn, Kelvin J. Liu, Todd M. Wilson, Clinton W. Epps, Laurie Dizney, Luis A. Ruedas, and Polly Campbell

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Weak Coupling Among Barrier Loci and Waves of Neutral and Adaptive Introgression Across an Expanding Hybrid Zone, Mitchell Cruzan, Pamela G. Thompson, Nicolas Alexander Diaz, Elizabeth C. Hendrickson, Katie R. Gerloff, Katie A. Kline, Hannah M. Machiorlete, and Jessica Persinger

Cul3 is Required for Normal Development of the Mammary Gland., Cristina M. Cummings and Jeffrey D. Singer

A Comparison of Fruit Removal in Ficus Colubrinae Between Birds and Ectophylla Alba (chiroptera: Phyllostomidae) in a Costa Rican Rain Forest, Edna De la Llata Quiroga, Luis A. Ruedas, and Jose Manuel Mora

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Genetic Variation within a Species of Parasitic Nematode, Skrjabingylus chitwoodorum, in Skunks, Allie N. Denham, Malorri R. Hughes, Robert C. Dowler, Nicholas J. Negovetich, and Loren K. Ammerman

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TREM2 is Thyroid Hormone Regulated Making the TREM2 Pathway Druggable with Ligands for Thyroid Hormone Receptor., Skylar J. Ferrara, Priya Chaudhary, Margaret J. DeBell, Gail Marracci, Hannah Miller, Evan Calkins, Edvinas Pocius, Brooke A. Napier, Ben Emery, Dennis Bourdette, and Thomas S. Scanlan

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Applying Behavioral and Physiological Measures to Assess the Relative Impact of the Prolonged COVID-19 Pandemic Closure on Two Mammal Species at the Oregon Zoo: Cheetah (A. jubatus) and Giraffe (G. c. reticulata and G. c. tippelskirchii), Laurel Fink, Candace D. Scarlata, Becca Vanbeek, Todd Bodner, and Nadja C. Wielebnowski

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A Pilot Study of Near-Field Airborne Particle Concentrations in Young Children Undergoing High Flow Nasal Cannula Therapy., Elliott T. Gall, Aurélie Laguerre, Michelle Noelck, Annalise Van Meurs, Jared A. Austin, and Byron A. Foster

Variation in Incubation Length and Hatching Asynchrony in Eastern Kingbirds: Weather Eclipses Female Effects, Samantha M. Gillette, Amanda L. Klehr, and Michael T. Murphy

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Is This Science? Students' Experiences of Failure Make a Research-Based Course Feel Authentic, Emma C. Goodwin, Vladimir Anokhin, MacKenzie J. Gray, Daniel E. Zajic, Jason Podrabsky, and Erin E. Shortlidge

Organochlorine Exposure and Health Effects in Stranded Steller Sea Lions (eumetopias Jubatus) and Pacific Harbor Seals (phoca Vitulina Richardii) from Oregon and Southern Washington Coasts, Deke Gundersen, Daniel Josefchak, Deborah A. Duffield, Dalin N. D'Alessandro, and James M. Rice

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Male Fetal Sex Affects Uteroplacental Angiogenesis in Growth Restriction Mouse Model, Jessica F. Hebert, Jess A. Millar, Rahul Raghavan, Amie L. Romney, Jason Podrabsky, Monique Y. Rennie, Allison Felker, Perrie O'Tierney-Ginn, Mayu Morita, Elizabeth A. DuPriest, and Terry K. Morgan

Leaf Traits Indicative of Drought Resistance in Hybrid Poplar, Austin Himes, Paul Emerson, Rose McClung, Heidi Renninger, Todd Rosenstiel, and Brian Stanton

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Events Associated with DNA Replication Disruption Are Not Observed in Hydrogen Peroxide-Treated Escherichia Coli, Chettar A. Hoff, Sierra S. Schmidt, Brandy J. Hackert, Travis K. Worley, Justin Courcelle, and Charmain Courcelle

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Dynamic Control of Upper Limb Stretch Reflex in Wrestlers, Sho Ito, Kento Nakagawa, Tsuyoshi Nakajima, Misaki Iteya, Larry Crawshaw, and Kazuyuki Kanosue

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Inter- and intracontinental Migration by the Eastern Kingbird (Tyrannus tyrannus), Daniel H. Kim, Lucas J. Redmond, James R. Fox, and Michael T. Murphy

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The Genetic Architecture of Sexual Dimorphism in the Moss, Leslie M. Kollar, Scott Kiel, Ashley J. James, Cody T. Carnley, Danielle N. Scola, Taylor N. Clark, Tikahari Khanal, Todd Rosenstiel, Elliott T. Gall, Karl Grieshop, and Stuart F. McDaniel

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Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: Update of Taxonomy Changes in 2021, Mart Krupovic, Dann Turner, Vera Morozova, Mike L. Dyall-Smith, Hanna M. Oksanen, Rob Edwards, Bas E. Dutilh, Kenneth M. Stedman, and multiple additional authors

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Towards Understanding the Welfare of Cetaceans in Accredited Zoos and Aquariums, Lisa K. Lauderdale, Jill D. Mellen, Michael T. Walsh, Douglas A. Granger, and Lance J. Miller

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Bottlenose Dolphin Habitat and Management Factors Related to Activity and Distance Traveled in Zoos and Aquariums, Lisa K. Lauderdale, K. Alex Shorter, Ding Zhang, Joaquin Gabaldon, Jill D. Mellen, Michael T. Walsh, Douglas A. Granger, and Lance J. Miller

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Habitat Characteristics and Animal Management Factors Associated with Habitat Use by Bottlenose Dolphins in Zoological Environments, Lisa K. Lauderdale, K. Alex Shorter, Ding Zhang, Joaquin Gabaldon, Jill D. Mellen, Michael T. Walsh, Douglas A. Granger, and Lance J. Miller

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Environmental Enrichment, Training, and Habitat Characteristics of Common Bottlenose Dolphins (tursiops Truncatus) and Indo-Pacific Bottlenose Dolphins (Tursiops Aduncus), Lisa K. Lauderdale, Michael T. Walsh, Jill D. Mellen, Douglas A. Granger, and Lance J. Miller

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Health Reference Intervals and Values for Common Bottlenose Dolphins (tursiops Truncatus), Indo-Pacific Bottlenose Dolphins (tursiops Aduncus), Pacific White-Sided Dolphins (lagenorhynchus Obliquidens), and Beluga Whales (delphinapterus Leucas), Lisa K. Lauderdale, Michael T. Walsh, Kevin A. Mitchell, Douglas A. Granger, Jill D. Mellen, and Lance J. Miller

Trans-Seasonal Activation of the Neuroendocrine Reproductive Axis: Low-Temperature Winter Dormancy Modulates Gonadotropin-Releasing Hormone Neurons in Garter Snakes, Deborah Lutterschmidt, Ashley R. Lucas, and Andrew R. Summers

Recursive Adaptation in Action: Allochronic Isolation and Divergence of Host-Associated Populations of the Apple Maggot Fly, Rhagoletis Pomonella, Following Its Recent Introduction to the Western USA, Monte Mattsson, Glen Ray Hood, Wee L. Yee, Meredith M. Doellman, Daniel J. Bruzzese, Robert B. Goughnour, Amanda L. Driscoe, Seth Van Dexter, Cheyenne Tait, Mary M. Glover, Pete Meyers, Luis A. Ruedas, and Jeffrey L. Feder

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Modulation of Bacterial Fitness and Virulence Through Antisense RNAs, Jess A. Millar and Rahul Raghavan

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Behavioral Diversity As a Potential Positive Indicator of Animal Welfare in Bottlenose Dolphins, Lance J. Miller, Lisa K. Lauderdale, Jocelyn L. Bryant, Jill D. Mellen, Michael T. Walsh, and Douglas A. Granger

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Assessment of Animal Management and Habitat Characteristics Associated with Social Behavior in Bottlenose Dolphins Across Zoological Facilities, Lance J. Miller, Lisa K. Lauderdale, Jill D. Mellen, Michael T. Walsh, and Douglas A. Granger