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Submissions from 2013

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Residential Edges as Ecological Traps: Postfledgling Survival of a Ground-Nesting Passerine in a Forested Urban Park, Amy A. Shipley, Michael T. Murphy, and Adam H. Elzinga

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Microbial Biogeochemistry of Boiling Springs Lake: a Physically Dynamic, Oligotrophic, Low-p H Geothermal Ecosystem, Patricia Lynne Siering, Gordon V. Wolfe, Mark S. Wilson, A. N. Yip, Cynthia M. Carey, Colin D. Wardman, Russell Scott Shapiro, Kenneth M. Stedman, Jennifer E. Kyle, Tong Yuan, Joy D. Van Nostrand, Zhili He, and Jizhong Zhou

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Consequences of Mycorrhizal Colonization for Piriqueta Morphotypes under Drought Stress, Paul Sochacki, Jennifer Rhode Ward, and Mitchell B. Cruzan

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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages, Cristina Takacs-Vesbach, William P. Inskeep, Zackary J. Jay, Markus J. Herrgard, Douglas B. Rusch, Susannah G. Tringe, Mark A. Kozubal, Natsuko Hamamura, Richard E. Macur, Bruce W. Fouke, Anna-Louise Reysenbach, Timothy R. McDermott, Ryan deM. Jennings, Nicolas W. Hengartner, and Gary Xie

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Asian Primate Species Richness Correlates with Rainfall, Yi-Chen Wang, Amrita Srivathsan, Chen-Chieh Feng, Agus Salim, and Myron Shekelle

Submissions from 2012

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Cephalopod Genomics: A Plan of Strategies and Organization, Caroline B. Albertin, Laure Bonnaud, C. Titus Brown, Wendy J. Crookes-Goodson, Rute R. da Fonseca, Carlo Di Cristo, Brian P. Dilkes, Eric Edsinger-Gonzales, Robert M. Freeman Jr., Roger T. Hanlon, Kristen M. Koenig, Annie R. Lindgren, Mark Q. Martindale, Patrick Minx, Leonid L. Moroz, Marie-Therese Nödl, Spencer V. Nyholm, Atsushi Ogura, Judit R. Pungor, Joshua J. C. Rosenthal, Erich M. Schwarz, Shuichi Shigeno, Jan M. Strugnell, Tim Wollesen, Guojie Zhang, and Clifton W. Ragsdale

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Differential Virus Host-Ranges of the Fuselloviridae of Hyperthermophilic Archaea: Implications for Evolution in Extreme Environments, Ruben M. Ceballos, Caleb D. Marceau, Joshua O. Marceau, Steven Morris, Adam J. Clore, and Kenneth M. Stedman

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Evidence of reduced arbuscular mycorrhizal fungal colonization in multiple lines of Bt maize, Tanya E. Cheeke, Todd N. Rosenstiel, and Mitchell B. Cruzan

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Selfish Little Circles: Transmission Bias and Evolution of Large Deletion-Bearing Mitochondrial DNA in Caenorhabditis briggsae Nematodes, Katie A. Clark, Dana K. Howe, Kristin Gafner, Danika Kusuma, Sita Ping, and Suzanne Estes

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The Breeding Biology of the Northern Pygmy Owl: Do the Smallest of the Small Have an Advantage?, John F. Deshler and Michael T. Murphy

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Sub-Antarctic and High Antarctic Notothenioid Fishes: Ecology and Adaptational Biology Revealed by the ICEFISH 2004 Cruise of RVIB Nathaniel B. Palmer, H. William Detrich III, Bradley A. Buckley, Daniel F. Doolittle, Christopher D. Jones, and Susanne J. Lockhart

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A Novel Virus Genome Discovered in an Extreme Environment Suggests Recombination Between Unrelated Groups of RNA and DNA Viruses, Geoffrey S. Diemer and Kenneth M. Stedman

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Genomic Amplification of an Endogenous Retrovirus in Zebrafish T-Cell Malignancies, J. Kimble Frazer, Lance A. Batchelor, Diana F. Bradley, Kim H. Brown, Kimberly P. Dobrinski, Charles Lee, and Nikolaus S. Trede

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In Vivo Quantification Reveals Extensive Natural Variation in Mitochondrial Form and Function in Caenorhabditis briggsae, Kiley Ann Hicks, Dana K. Howe, Aubrey Leung, Dee R. Denver, and Suzanne Estes

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A Genetic Study of SSV1, the Prototypical Fusellovirus, Eric Iverson and Kenneth M. Stedman

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Inefficient Replication Reduces RecA-mediated Repair of UVdamaged Plasmids introduced into competent Escherichia coli, Harout Arthur Jeiranian, Charmain T. Courcelle, and Justin Courcelle

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Host Plant Use by Competing Acacia-Ants: Mutualists Monopolize While Parasites Share Hosts, Stefanie Kautz, Daniel J. Ballhorn, Johannes Kroiss, Steffen U. Pauls, Corrie S. Moreau, Sascha Eilmus, Erhard Strohm, and Martin Heil

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Cytoskeletal Strains in Modeled Optohydrodynamically Stressed Healthy and Diseased Biological Cells, Sean S. Kohles, Yu Liang, and Asit K. Saha

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A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment, Annie R. Lindgren, Molly S. Pankey, Frederick G. Hochberg, and Todd H. Oakley

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Cell Cycle Arrest Associated with Anoxia-Induced Quiescence, Anoxic Preconditioning, and Embryonic Diapause in Embryos of the Annual Killifish Austrofundulus Limnaeus, Camie Lynn Meller, Robert Meller, Roger P. Simon, Kristin M. Culpepper, and Jason E. Podrabsky

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UvrD Participation in Nucleotide Excision Repair Is Required for the Recovery of DNA Synthesis following UV-Induced Damage in Escherichia coli, Kelley Nicole Newton, Charmain T. Courcelle, and Justin Courcelle

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Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny, Todd H. Oakley, Joanna M. Wolfe, Annie R. Lindgren, and Alexander K. Zaharoff

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Pseudoscorpion mitochondria show rearranged genes and genome-wide reductions of RNA gene sizes and inferred structures, yet typical nucleotide composition bias, Sergey Ovchinnikov and Susan E. Masta

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Anoxia Tolerance During Vertebrate Development - Insights from Studies on the Annual Killifish Austrofundulus limnaeus, Jason E. Podrabsky, Claire L. Riggs, and Jeffrey M. Duerr

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Spatio-Temporal Differentiation and Sociality in Spiders, Jessica Purcell, João Vasconcellos-Neto, Jeffrey Alan Fletcher, Marcelo O. Gonzaga, and Leticia Avilés

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A Selective Force Favoring Increased G+C Content in Bacterial Genes, Rahul Raghavan, Yogeshwar D. Kelkar, and Howard Ochman

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Antisense transcription is pervasive but rarely conserved in enteric bacteria, Rahul Raghavan, D. B. Sloan, and H. Ochman

Sex-specific Volatile Compounds Influence Microarthropod-mediated Fertilization of Moss, Todd Rosenstiel, Erin E. Shortlidge, Andrea Natalie Melnychenko, James F. Pankow, and Sarah M. Eppley

Tolerance to Environmental Desiccation in Moss Sperm, Erin Shortlidge, Todd Rosenstiel, and Sarah M. Eppley

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Links from Mantle to Microbe at the Lau Integrated Study Site: Insights from a Back-Arc Spreading Center, Margaret K. Tivey, Erin Becker, Roxanne Beinart, Charles R. Fisher, Peter Girguis, Charles H. Langmuir, Peter J. Michael, and Anna-Louise Reysenbach

Submissions from 2011

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Growth Phase-Dependent Gene Regulation in Vivo in Sulfolobus Solfataricus, Melissa DeYoung, Michelle Thayer, John Van der Oost, and Kenneth M. Stedman

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Limits to Sexual Reproduction in Geothermal Bryophytes, Sarah M. Eppley, Todd N. Rosenstiel, Camille Brianne Graves, and Estefanía Llaneza García

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Natural Variation in Life History and Aging Phenotypes is Associated with Mitochondrial DNA Deletion Frequency in Caenorhabditis Briggsae, Suzanne Estes, Anna Luella Coleman-Hulbert, Kiley Ann Hicks, Gene de Haan, Sarah R. Martha, Jeremiah B. Knapp, Samson William Smith, Kevin C. Stein, and Dee R. Denver

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The application of GIS and spatiotemporal analyses to investigations of unusual marine mammal strandings and mortality events, Stephanie A. Norman, Jessie Huggins, Tim E. Carpenter, James T. Case, Dyanna M. Lambourn, James M. Rice, John Calambokidis, Joseph K. Gaydos, M. Bradley Hanson, Deborah A. Duffield, Sandra Dubpernell, Susan Berta, and Matt Klope

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Genome-Wide Detection of Novel Regulatory RNAs in E. Coli, Rahul Raghavan, Eduardo Groisman, and Howard Ochman

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Multistate Mark-Recapture Analysis Reveals No Effect of Blood Sampling on Survival and Recapture of Eastern Kingbirds (Tyrannus Tyrannus), Lucas J. Redmond and Michael T. Murphy

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Escherichia Coli Fpg Glycosylase is Nonrendundant and Required for the Rapid Global Repair of Oxidized Purine and Pyrimidine Damage In Vivo, Brandy J. Schalow, Charmain T. Courcelle, and Justin Courcelle

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In Situ Enrichment of Ocean Crust Microbes on Igneous Minerals and Glasses Using an Osmotic Flow‐Through Device, Amy Renee Smith, Martin Fisk, Radu Popa, Mark Nielsen, C. Geoffrey Wheat, Hans W. Jannasch, Andrew T. Fisher, Keir Becker, Stefan M. Sievert, and Gilberto Flores

Submissions from 2010

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Thermocrinis minervae sp. nov., A Hydrogen and Sulfur-oxidizing, Thermophilic Member of the Aquificales from a Costa Rican Terrestrial Hot Spring, Sara L. Caldwell, Yitai Liu, Isabel Ferrera, Terry Beveridge, and Anna-Louise Reysenbach

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Pcif1 modulates Pdx1 protein stability and pancreatic β cell function and survival in mice, Kathryn C. Claiborn, Mira M. Sachdeva, Corey E. Cannon, David N. Groff, Jeffrey D. Singer, and Doris A. Stoffers

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Mitochondrial Physiology of Diapausing and Developing Embryos of the Annual Killifish Austrofundulus Limnaeus: Implications for Extreme Anoxia Tolerance, Jeffrey M. Duerr and Jason E. Podrabsky

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Metagenomes from High-Temperature Chemotrophic Systems Reveal Geochemical Controls on Microbial Community Structure and Function, William P. Inskeep, Douglas B. Rusch, Zackary J. Jay, Markus J. Herrgard, Mark A. Kozubal, Toby H. Richardson, Richard E. Macur, Natsuko Hamamura, Ryan deM. Jennings, Bruce W. Fouke, Anna-Louise Reysenbach, Frank Roberto, Mark Young, Ariel Schwartz, Eric S. Boyd, Jonathan H. Badger, Eric J. Mathur, Alice C. Ortmann, Mary Bateson, and Gill Geesey

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The cyclin E regulator cullin 3 prevents mouse hepatic progenitor cells from becoming tumor-initiating cells, Uta Kossatz, Kai Breuhahn, Benita Wolf, Matthias Hardtke-Wolenski, Ludwig Wilkens, Doris Steinemann, Stephan Singer, Felicitas Brass, Stefan Kubicka, Brigitte Schlegelberger, Peter Schirmacher, Michael P. Manns, Jeffrey D. Singer, and Nisar P. Malek

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Virus Silicification under Simulated Hot Spring Conditions, James R. Laidler and Kenneth M. Stedman

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Selection Ratios on Community Aggregated Traits to Estimate Ecological Filters Imposed on Species by Sites, Nathanael I. Lichti and Michael T. Murphy

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Hearing loss in stranded odontocete dolphins and whales, David Mann, Mandy Hill-Cook, Charles Manire, Danielle Greenhow, Eric Montie, Jessica Powell, Randall Wells, Gordon Bauer, Petra Cunningham-Smith, Robert Lingenfelser, Robert DiGiovanni, Abigale Stone, Micah Brodsky, Robert Stevens, George Kieffer, and Paul Hoetjes

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The Isolation of Viruses Infecting Archaea, Kenneth M. Stedman, Kate Porter, and Mike L. Dyall-Smith

Submissions from 2009

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Sex-Specific Variation in the Interaction Between Distichlis Spicata (Poaceae) and Mycorrhizal Fungi, Sarah M. Eppley, Charlene Ashley Mercer, Christian Haaning, and Camille Brianne Graves

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Rearrangement of the RNA Polymerase Subunit H and the Lower Jaw in Archaeal Elongation Complexes, Sebastian Grünberg, Christoph Reich, Mirijam E. Zeller, Michael S. Bartlett, and Michael Thomm

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Fecal-Sac Ingestion by Spotted Towhees, Jenny E. McKay, Michael T. Murphy, Sarah Bartos Smith, and Jennifer K. Richardson

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One RNA Plays Three Roles to Provide Catalytic Activity to a Group I Intron Lacking an Endogenous Internal Guide Sequence, Nilesh Vaidya and Niles Lehman

Submissions from 2007

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Spiders fluoresce variably across many taxa, Kindra Andrews, Scott M. Reed, and Susan E. Masta

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Mechanisms of Covalent Self-Assembly of the Azoarcus Ribozyme From Four Fragment Oligonucleotides, Will E. Draper, Eric John Hayden, and Niles Lehman

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A Cautionary Tale: Cryptic Sexual Size Dimorphism in a Socially Monogamous Passerine, Michael T. Murphy

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Lifetime reproductive Success of Female Eastern Kingbirds (Tyrannus Tyrannus): Influence of Lifespan, Nest Predation and Body Size, Michael T. Murphy

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Nest Reuse by Eastern Kingbirds: Adaptive Behavior or Ecological Constraint?, Lucas J. Redmond, Michael T. Murphy, and Amy C. Dolan

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Sporophytic inbreeding depression in mosses occurs in a species with separate sexes but not in a species with combined sexes, Philip J. Taylor, Sarah M. Eppley, and Linley K. Jesson

Submissions from 2006

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Isolation of a Ubiquitous Obligate Thermoacidophilic Archaeon From Deep-Sea Hydrothermal Vents, Anna-Louise Reysenbach, Yitai Liu, Amy B. Banta, Terry J. Beveridge, Julie D. Kirshtein, Stefan Schouten, Margaret K. Tivey, Karen L. Von Damm, and Mary A. Voytek

Submissions from 2005

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Contributions of Heterosis and Epistasis to Hybrid Fitness, Mitchell B. Cruzan

Submissions from 2004

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Patterns of Fitness and Fluctuating Asymmetry Across a Broad Hybrid Zone, Mitchell B. Cruzan

Submissions from 2003

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The Hyperthermophilic Archaeon Sulfolobus : from Exploration to Exploitation, Stan J.J. Brouns, Thijs J.G. Ettema, Kenneth M. Stedman, Jasper Walther, Hauke Smith, Ambrosius P.L. Snijders, Mark Young, Rolf Bernander, Phillip C. Wright, Betina Siebers, and John Van der Oost

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Avian Population Trends Within the Evolving Agricultural Landscape of the Eastern and Central United States, Michael T. Murphy

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Comparative studies of evolutionary responses to light environments in Arabidopsis, Massimo Pigliucci, Heidi Pollard, and Mitchell B. Cruzan

Submissions from 2002

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Investigating the Relationship Between Cryptococcus Fagisuga and Fagus Grandifolia in Great Smoky Mountains National Park, Ashley B. Morris, Randall L. Small, and Mitchell B. Cruzan

Submissions from 2001

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High Frequency of Extra-Pair Paternity in Eastern Kingbirds, Diane L. Rowe, Michael T. Murphy, Robert C. Fleischer, and Paul G. Wolf

Submissions from 2000

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Is reproduction by Tree Swallows (Tachycineta bicolor) Cost-Free?, Michael T. Murphy

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pING Family of Conjugative Plasmids from the Extremely Thermophilic Archaeon Sulfolobus islandicus: Insights into Recombination and Conjugation in Crenarchaeota, Kenneth M. Stedman, Qunxin She, Hien Phan, Harpreet Singh, David Prangishvili, Roger Garrett, and Wolfram Zillig

Submissions from 1999

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Cullin-3 Targets Cyclin E for Ubiquitination and Controls S Phase in Mammalian Cells, Jeffrey D. Singer, Mark Gurian-West, Bruce Clurman, and James M. Roberts

Submissions from 1998

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Genetic Markers in Plant Evolutionary Ecology, Mitchell B. Cruzan

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Intrapopulation Sex Ratio Variation in the Salt Grass Distichlis spicata, Sarah M. Eppley, Maureen L. Stanton, and Richard K. Grosberg

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An Ecology Problem Book, Marc Mangel, Paul Switzer, and Sarah M. Eppley

Submissions from 1996

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Postpollination mechanisms influencing mating patterns and fecundity: an example from Eichhornia paniculata, Mitchell B. Cruzan

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An Ecology Field Project Book, Marc Mangel, Paul Switzer, and Sarah M. Eppley

Submissions from 1994

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Breeding Patterns of Eastern Phoebes in Kansas: Adaptive Strategies or Physiological Constraint?, Michael T. Murphy

Submissions from 1993

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Prokaryotic Enhancer-Binding Proteins Reflect Eukaryote-Like Modularity: the Puzzle of Nitrogen Regulatory Protein C, Anne K. North, Karl E. Klose, Kenneth M. Stedman, and Sydney Kustu

Submissions from 1989

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Temporal patterns of nectar and pollen production in Aralia hispida: implications for reproductive success, James D. Thomas, Mary A. McKenna, and Mitchell B. Cruzan

Submissions from 1987

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The Impact of Weather on Kingbird Foraging Behavior, Michael T. Murphy

Submissions from 1986

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Body Size and Condition, Timing of Breeding, and Aspects of Egg Production in Eastern Kingbirds, Michael T. Murphy

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Brood Parasitism of Eastern Kingbirds by Brown-Headed Cowbirds, Michael T. Murphy

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Body Size, Nest Predation, and Reproductive Patterns in Brown Thrashers and Other Mimids, Michael T. Murphy and Robert C. Fleischer

Submissions from 1983

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Clutch Size in the Eastern Kingbird: Factors Affecting Nestling Survival, Michael T. Murphy

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Nest Success and Nesting Habits of Eastern Kingbirds and Other Flycatchers, Michael T. Murphy