Submissions from 2020
Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements, Julie C. Dunning Hotopp, David A. Baltrus, Vincent M. Bruno, John J. Dennehy, Steven R. Gill, Julia A. Maresca, Jelle Matthijnssens, Irene L. J. Newton, Catherine Putonti, David A. Rasko, Antonis Rokas, Simon Roux, Jason E. Stajich, Kenneth M. Stedman, Frank J. Stewart, and J. Cameron Thrash
Fetal Renal DNA Methylation and Developmental Programming of Stress-Induced Hypertension in Growth-Restricted Male Mice, Elizabeth DuPriest, Jessica Faith Hebert, Mayu Morita, Nicole Marek, Emily E.K. Meserve, Nicole Andeen, E. Andres Houseman, Yue Qi, Saleh Alwasel, Jens Nyengaard, and Terry Morgan
Effects of Management for Productivity on Adult Survival of Snowy Plovers, Eleanor P. Gaines, Stephen J. Dinsmore, and Michael T. Murphy
Fine-Scale Habitat Heterogeneity and Vole Runways Influence Seed Dispersal in Plagiobothrys Nothofulvus, Monica R. Grasty, Pamela G. Thompson, Elizabeth C. Hendrickson, Avery E. Pheil, and Mitchell B. Cruzan
Quantitative and Qualitative Approaches to Assess Tree Vigor and Stand Health in Dry Pine Forests, Nancy Grulke, Craig Bienz, Kate Hrinkevich, Jason Maxfield, and Kellie Uyeda
Pre-Emptive Detection of Mature Pine Drought Stress Using Multispectral Aerial Imagery, Nancy Grulke, Jason Maxfield, Phillip Riggan, and Charlie Schrader-Patton
The Spleen as an Unlikely Source of red blood cells during activity in fishes, Michael S. Hedrick, Kenneth R. Olson, and Stanley S. Hillman
Control of Blood Volume Following Hypovolemic Challenge in Vertebrates: Transcapillary Versus Lymphatic Mechanisms., Stanley S. Hillman, Robert C. Drewes, and Michael S. Hedrick
First Report of Molecular Characterization and Phylogeny of Trichuris fossor Hall, 1916 (Nematoda: Trichuridae), Malorri R. Hughes, Deborah A. Duffield, Dana K. Howe, and Dee Denver
A Basic ddRADseq Two‐Enzyme Protocol Performs Well with Herbarium and Silica‐Dried Tissues across Four Genera, Ingrid E. Jordon‐Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nick Diaz, Jason T. Cantley, Christopher T. Martine, and Carl J. Rothfels
Direct Binding of TFEα Opens DNA Binding Cleft of RNA Polymeras, Sung-Hoon Jun, Jaekyung Hyun, Hoyoung Kim, Michael S. Bartlett, Hyun-Soo Cho, and Katsuhiko S. Murakami
High Productivity in Hybrid-poplar Plantations Without Isoprene Emission to the Atmosphere, Russell K. Monson, Barbro Winkler, Todd Rosenstiel, Katja Block, Juliane Merl-Pham, Steven Strauss, Kori Ault, Jason Maxfield, David J.P. Moore, Nicole A. Trahan, and multiple additional authors
Systematics, Distribution, and Conservation Status of Dice's Cottontail, Sylvilagus Dicei Harris, 1932 (mammalia, Lagomorpha, Leporidae), in Central America, Jose M. Mora, Sofia M. Silva, Lucia Lopez I, Mary K. Burnham-curtis, Darren J. Wostenberg, Johnnie H. French, and Luis A. Ruedas
Roadmap for Naming Uncultivated Archaea and Bacteria, Alison Murray, John Freudenstein, Simonetta Gribaldo, Roland Hatzenpichler, Philip Hugenholtz, Peter Kämpfer, Konstantinos T. Konstantinidis, Christopher E. Lane, R. Thane Papke, Anna-Louise Reysenbach, and multiple additional authors
Bone Mineral Density of the Common Bottlenose Dolphin Radius: A Primary Skeletal Site for Clinical Bone Densitometry and Preliminary Descriptive Data Set Using Archival Specimens, James W. B. Powell, Debbie Duffield, Jonathan J. Kaufman, Gangming Luo, Gretchen N. Lovewell, and Wayne E. McFee
Deliberative Democracy: Investigating the Longitudinal Impacts of Democratic Activities in Introductory Biology Courses, Liz Rain-Griffith, Sarah Sheghewi, Gwen Shusterman, Jack Barbera, and Erin Shortlidge
Pathology Findings and Correlation with Body Condition index in stranded Killer Whales (Orcinus orca) in the Northeastern Pacific and Hawaii from 2004 to 2013, Stephen A. Raverty; Judy St. Leger; Dawn P. Noren; Kathy Burek Huntington; David S. Rotstein; Francis M.D. Gulland,; Deborah A. Duffield; and multiple additional authors
Complex Subsurface Hydrothermal Fluid Mixing at a Submarine Arc Volcano Supports Distinct and Highly Diverse Microbial Communities., Anna-Louise Reysenbach, Emily St John, Jennifer Meneghin, Gilberto E. Flores, Mircea Podar, Nina Dombrowski, Anja Spang, Stephane L'Haridon, Susan E. Humphris, and Cornel E J de Ronde
Editor's Choice: Aldo Leopold Conservation Award, Luis A. Ruedas
From Theory to Practice: Gathering Evidence for the Validity of Data Collected with the Interdisciplinary Science Rubric (IDSR)., Brie Tripp and Erin E. Shortlidge
Crossing Boundaries: Steps Toward Measuring Undergraduates' Interdisciplinary Science Understanding, Brie Tripp, Sophia A. Voronoff, and Erin Shortlidge
Archaeosine Modification of Archaeal tRNA - A Role in Structural Stabilization, Ben Turner, Brett w. Burkhart, Katrin Weidenbach, Robert Ross, Patrick A. Limbach, Ruth A. Schmitz, Valérie de Crécy-Lagard, Kenneth M. Stedman, Thomas J. Santangelo, and Dirk Iwata-Reuyl
Novel Small RNAs Expressed by Bartonella Bacilliformis Under Multiple Conditions Reveal Potential Mechanisms for Persistence in the Sand Fly Vector and Human Host, Shaun Wachter, Linda D. Hicks, Rahul Raghavan, and Michael F. Minnick
Mitochondrial DNA Variation and Selfish Propagation Following Experimental Bottlenecking in Two Distantly Related Caenorhabditis briggsae Isolates, Josiah Tad Wagner, Dana K. Howe, Suzanne Estes, and Dee R. Denver
Uv-Induced DNA Damage Disrupts the Coordination Between Replication Initiation, Elongation, and Completion., Brian M. Wendel, Suzanne Hollingsworth, Charmain T. Courcelle, and Justin Courcelle
Exogenous Leptin Promotes Reproductive Behavior During Aphagia in Red-Sided Garter Snakes (thamnophis Sirtalis Parietalis)., Rachel C. Wilson, Michael P. LeMaster, and Deborah I. Lutterschmidt
Energy Metrics of Red-Sided Garter Snakes (thamnophis Sirtalis Parietalis) Vary with Sex but Not Life-History Stage, Rachel C. Wilson and Deborah Lutterschmidt
Do Foliar Endophytes Matter in Litter Decomposition?, Emily R. Wolfe and Daniel J. Ballhorn
No Water, No Problem: Stage-Specific Metabolic Responses to Dehydration Stress in Annual Killifish Embryos, Daniel E. Zajic, Jonathon P. Nicholson, and Jason Podrabsky
GABA Metabolism is Crucial for Long-Term Survival of Anoxia in Annual Killifish Embryos, Daniel E. Zajic and Jason Podrabsky
Metabolomics Analysis of Annual Killifish (austrofundulus Limnaeus) Embryos During Aerial Dehydration Stress, Daniel Zajic and Jason Podrabsky
Submissions from 2019
Conditional Deletion of Smooth Muscle Cullin-3 Causes Severe Progressive Hypertension, Larry N. Agbor, Anand R. Nair, Jing Wu, Ko-Ting Lu, Deborah R. Davis, Henry L. Keen, Frederick W. Quelle, James A. McCormick, Jeffrey D. Singer, and Curt D. Sigmund
Cullin-3 Dependent Deregulation of ACTN1 Represents a New Pathogenic Mechanism in Nemaline Myopathy, Jordan Blondelle, Kavya Tallapaka, Jane T. Seto, Majid Ghassemian, Madison Clark, Jenni M. Laitila, Adam Bournazos, Jeffrey Singer, and Stephan Lange
Sex Ratio and Sex Expression in an Urban Population of the Silver Moss, Bryum argenteum Hedw, Richard C. Castetter, D. Nicholas McLetchie, Sarah Eppley, and Lloyd R. Stark
Multitrait Genome-wide Association Analysis of Populus Trichocarpa Identifies Key Polymorphisms Controlling Morphological and Physiological Traits, Hari B. Chhetri, David Macaya-Sanz, David Kainer, Ajaya K. Biswal, Luke M. Evans, Jin-Gui Chen, Cassandra Collins, Kimberly Hunt, Sushree S. Mohanty, Todd Rosenstiel, David Ryno, Kim Winkeler, Xiaohan Yang, Daniel Jacobson, Debra Mohnen, Wellington Muchero, Steven H. Strauss, Timothy J. Tschaplinski, Gerald A. Tuskan, and Stephen P. DiFazio
Forest Passerines as a Novel Dispersal Vector of Viable Bryophyte Propagules, Matthew W. Chmielewski and Sarah M. Eppley
How to Make a Weed: The Saga of the Slender False Brome Invasion in the North American West and Lessons for the Future, Mitchell B. Cruzan
Salmonid passive integrated transponder tags and coded wire tags found in the forestomach of a harbor porpoise (Phocoena phocoena) in southwestern Washington, Dalin Nichole D'Alessandro and Debbie Duffield
Cul3 Regulates Cyclin E1 Protein Abundance via a Degron Located within the N-terminal Region of cyclin E, Brittney Marie Davidge, Katia de Oliveira Rebola, Larry N. Agbor, Curt D. Sigmund, and Jeffrey D. Singer
Genome Sequences of Three Cruciviruses Found in the Willamette Valley (Oregon), Ignacio de la Higuera, Ellis L. Torrance, Alyssa A. Pratt, George Kasun, Amberlee Maluenda, and Kenneth M. Stedman
RecBCD, SbcCD and ExoI Process a Substrate Created by Convergent Replisomes to Complete DNA Replication, Nicklas A. Hamilton, Brian M. Wendel, Emma A. Weber, Charmain Courcelle, and Justin Courcelle
Beyond the Powerhouse: Integrating Mitonuclear Evolution, Physiology, and Theory in Comparative Biology, Justin C. Havird, Ryan J. Weaver, Liliani Milani, Fabrizio Ghiselli, Ryan Greenway, Adam J. Ramsey, Ana G. Jimenez, Damian K. Dowling, Wendy R. Hood, Kristi L. Montooth, Suzanne Estes, Patricia M. Schulte, Inna M. Sokolova, and Geoffrey Hill
Manganese is Required for the Rapid Recovery of DNA Synthesis Following Oxidative Challenge in Escherichia coli, Corrine R. Hutfilz, Natalie E. Wang, Chettar A. Hoff, Jessica A. Lee, Brandy Hackert, Justin Courcelle, and Charmain Courcelle
Differences Between Male and Female Elite Free-style Wrestlers in the Effects of “Set Up” on Leg Attack, Sho Ito, Larry Crawshaw, and Kazuyuki Kanosue
Marinitoga Lauensis sp. nov., A Novel Deep-sea Hydrothermal Vent Thermophilic Anaerobic Heterotroph with a Prophage, Stéphane L'Haridon, Léna Gouhie, Emily St. John, and Anna-Louise Reysenbach
Complex History of Codiversification and Host Switching of a Newfound Soricid-Borne Orthohantavirus in North America, Schuyler W. Liphardt, Hae Ji Kang, Laurie J. Dizney, Luis A. Ruedas, Joseph A. Cook, and Richard Yanagihara
Trait Divergence, Not Plasticity, Determines the Success of a Newly Invasive Plant, Gina L. Marchini, Caitlin A. Maraist, and Mitchell B. Cruzan
Species-Specific Effects of Passive Warming in an Antarctic Moss System, Hannah M. Prather, Angélica Casanova-Katny, Andrew F. Clements, Matthew Chmielewski, Mehmet Ali Balkan, Erin Shortlidge, Todd Rosenstiel, and Sarah Eppley
Establishment and Characterization of an Anoxia-tolerant Cell Line, PSU-AL-WS4ONE, Derived from an Embryo of the Annual Killifish Austrofundulus Limnaeus, Claire L. Riggs, Rosey Le, Dietmar Kultz, Daniel Zajic, Amanda Summers, Luz Alvarez, and Jason E. Podrabsky
MitosRNAs and Extreme Anoxia Tolerance in Embryos of the Annual Killifish Austrofundulus limnaeus, Claire L. Riggs, Steven Cody Woll, and Jason Podrabsky
Size, Ornamentation, and Flight Feather Morphology Promote Within-pair Paternity in a Sexually Dimorphic Passerine, Diane V. Roeder, Michael S. Husak, Michael T. Murphy, and Michael A. Patten
Taxonomy Of The Sylvilagus Brasiliensis Complex In Central And South America (Lagomorpha: Leporidae), Luis A. Ruedas, Sofia Marques Silva, Johnnie H. French, Roy Nelson Platt, Jorge Salazar-Bravo, Jose M. Mora, and Cody W. Thompson
Disruption of CUL3-mediated Ubiquitination Causes Proximal Tubule Injury and Kidney Fibrosis, Turgay Saritas, Catherina A. Cuevas, Mohammed Z. Ferdaus, Christophe Kuppe, Rafael Kramann, Marcus J. Moeller, Jurgen Floege, Jeffrey Singer, and James A. McCormick
Despite Similar Perceptions and Attitudes, Postbaccalaureate Students Outperform in Introductory Biology and Chemistry Courses, Erin E. Shortlidge, Liz Rain-Griffith, Chloe Shelby, Gwen Shusterman, and Jack Barbera
Illuminating the Obscured Phylogenetic Radiation of South American Sylvilagus Gray, 1867 (Lagomorpha: Leporidae), Sofia Marques Silva, Luis A. Ruedas, Larissa Hasnah Santos, Jose de Sousa e Silva, and Alexandre Aleixo
Deep-sea Hydrothermal Vent Metagenome-assembled Genomes Provide Insight into the Phylum Nanoarchaeota, Emily St. John, Gilberto E. Flores, and Jennifer Meneghin
Complex Transmission Patterns and Age-Related Dynamics of a Selfish mtDNA Deletion, Jennifer Anne Sullins, Anna L. Coleman-Hulbert, Alexandra Gallegos, Dana K. Howe, Dee Denver, and Suzanne Estes
Differential Activity of Coexisting Prochlorococcus Ecotypes, Anne Thompson and Kathleen Kouba
A Framework to Guide Undergraduate Education in Interdisciplinary Science, Brie Tripp and Erin E. Shortlidge
Neomycin: An Effective Inhibitor of Jasmonate-Induced Reactions in Plants, Jyothilakshmi Vadassery, Daniel J. Ballhorn, Steven R. Fleming, Christian Mazars, Shree P. Pandey, Axel Schmidt, Meredith C. Schuman, Kai-Wun Yeh, Ayufu Yilamujiang, and Axel Mithöfer
A CsrA-Binding, Trans-Acting sRNA of Coxiella burnetii is Necessary for Optimal Intracellular Growth and Vacuole Formation During Early Infection of Host Cells, Shaun Wachter; Matteo Bonazzi,; Kyle Shifflett; Abraham Moses; Rahul Raghavan; and Michael F. Minnick
Antioxidant Capacity and Anoxia-tolerance in Austrofundulus limnaeus Embryos, Josiah Tad Wagner, Michael J. Knapp, and Jason E. Podrabsky
Sex and Mitonuclear Adaptation in Experimental Caenorhabditis elegans Populations, Riana I. Wernick, Stephen F. Christy, Dana K. Howe, Jennifer A. Sullins, Joseph F. Ramirez, Maura Sare, McKenna J. Penley, Levi T. Morran, Dee R. Denver, and Suzanne Estes
Submissions from 2018
Evidence for Human-mediated Range Expansion and Gene Flow in an Invasive Grass, Tina M. Arredondo, Gina L. Marchini, and Mitchell B. Cruzan
Quantitative Effects of Soil Salinity on the Symbiosis of Wild Lima Bean (Phaseolus lunatus L.) and Bradyrhizobium in Costa Rica, Daniel J. Ballhorn, Emily R. Wolfe, Jess Tyler, Wren Ronan, Scott Sands-Gouner, Curran Shaw, Mehmet Ali Balkan, and Stefanie Kautz
Annual Survival and Breeding Dispersal of a Migratory Passerine, the Scissor-tailed Flycatcher, Adam J. Becker, Diane V. Roeder, Michael S. Husak, and Michael T. Murphy
A Mitochondrial Phylogeny of the Family Onychoteuthidae Gray, 1847 (Cephalopoda: Oegopsida), Kat S.R. Bolstad, Heather E. Braid, Jan M. Strugnell, Annie R. Lindgren, Alexandra Lischka, Tsunemi Kubodera, Vladimir L. Laptikhovsky, and Alvaro Roura Labiaga
Genome-Wide Screening of Potential RNase Y-Processed mRNAs in the M49 Serotype Streptococcus Pyogenes NZ131, Zhiyun Chen, Rahul Raghavan, Fengxia Qi, Justin Merritt, and Jens Kreth
Dual Gain and Loss of Cullin 3 Function Mediates Familial Hyperkalemic Hypertension, Ryan J. Cornelius, Chang Zhang, Kayla J. Erspamer, Larry N. Agbor, Curt D. Sigmund, Jeffrey Singer, Chao-Ling Yang, and David H. Ellison
Displacement of the Transcription Factor B Reader Domain During Transcription Initiation, Stefan Dexl, Robert Reichelt, Katharina Kraatz, Sarah Schulz, Dina Grohmann, Michael S. Bartlett, and Michael Thomm
Origin, Evolution, and Loss of Bacterial Small RNAs, H. Auguste Dutcher and Rahul Raghavan
Rapid Population Sex-Ratio Changes in the Moss Ceratodon Purpureus, Sarah M. Eppley, Todd Rosenstiel, Matthew Chmielewski, S. Woll, Zoe Shaw, and Erin Shortlidge
Mutant Cullin 3 Causes Familial Hyperkalemic Hypertension Via Dominant Effects, Mohammed Z. Ferdaus, Lauren N. Miller, Larry N. Agbor, Turgay Saritas, Jeffrey D. Singer, Curt D. Sigmund, and James A. McCormick
Multiple Acquisitions of Pathogen-Derived Francisella Endosymbionts in Soft Ticks, Jonathan G. Gerhart, H. Auguste Dutcher, Amanda E. Brenner, Abraham S. Moses, Libor Grubhoffer, and Rahul Raghavan
Comparative Genetic and Genomic Analysis of the Novel Fusellovirus Sulfolobus Spindle-Shaped Virus 10, David Andrew Goodman and Kenneth M. Stedman
Comparative Genetic and Genomic Analysis of the Novel Fusellovirus Sulfolobus Spindle-Shaped Virus 10, David Andrew Goodman and Kenneth M. Stedman
Catching the Wave: Are Biology Graduate Students on Board with Evidence-Based Teaching?, Emma C. Goodwin, Jane N. Cao, Miles Fletcher, Justin L. Flaiban, and Erin E. Shortlidge
Physiological Vagility Affects Population Genetic Structure and Dispersal and Enables Migratory Capacity in Vertebrates, Thomas V. Hancock and Michael S. Hedrick
Density-Dependent Pollination and Germination in the Patchy Vernal Pool Species Lasthenia californica, Elizabeth C. Hendrickson, Pamela G. Thompson, and Mitchell B. Cruzan
Anuran Amphibians as Comparative Models for Understanding Extreme Dehydration Tolerance: A Unique Negative Feedback Lymphatic Mechanism for Blood Volume Regulation, Stanley S. Hillman
Assembly and Analysis of Unmapped Genome Sequence Reads Reveal Novel Sequence and Variation in Dogs, Lindsay Adrian Holden, Meharji Arumilli, Marjo K. Hytönen, Sruthi Hundi, Jarkko Salojärvi, Kim H. Brown, and Hannes Lohi
Baseline mRNA Expression Differs widely Between Common Laboratory Strains of Zebrafish, Lindsay Holden and Kim H. Brown
An Interrogation of Shared and Unique Copy Number Variants Across Genetically Distinct Zebrafish Strains, Lindsay Holden, Charles Wilson, and Zachary Heineman
Constitutive MAP-kinase Activation Suppresses Germline Apoptosis in NTH-1 DNA Glycosylase Deficient C. elegans, Henok Kassahun, Tamina SenGupta, Alfonso Schiavi, Suzanne Estes, Silvia Maglioni, Hanne K. Skjeldam, Katarzyna Arczewska, Nicole L. Brockway, Lars Eide, Natascia Ventura, and Hilde Nilsen
Connecting Chemistry to Community with Deliberative Democracy, Regis Komperda; Jack Barbera; Erin Shortlidge; Gwen Shusterman; and STEM Education and Equity Institute, Portland State University
Sexually Dimorphic Patterns of Cell Proliferation in the Brain Are Linked to Seasonal Life-History Transitions in Red-Sided Garter Snakes, Deborah Lutterschmidt, Ashley R. Lucas, Ritta A. Karam, Vicky T. Nguyen, and Meghann R. Rasmussen
Follow the Rain? Environmental Drivers of Tyrannus Migration across the New World, Maggie P. MacPherson, Alex E. Jahn, Michael T. Murphy, Daniel H. Kim, Victor R. Cueto, Diego T. Tuero, and Elliot D. Hill
Selective Differentiation During the Colonization and Establishment of a Newly Invasive Species, Gina L. Marchini, Tina M. Arredondo, and Mitchell B. Cruzan
Replication Rapidly Recovers and Continues in the Presence of Hydroxyurea in Escherichia coli, Samvel A. Nazaretyan, Neda Savic, Michael Sadek, Brandy J. Hackert, Justin Courcelle, and Charmain T. Courcelle
Divergence in Life-History and Developmental Traits in Silvery-Thread Moss (Bryum argenteum Hedw.) Genotypes between Golf Course Putting Greens and Native Habitats, Zane Raudenbush, Joshua L. Greenwood, D. Nicholas McLetchie, Sarah M. Eppley, Steven J. Keeley, Richard C. Castetter, and Lloyd R. Stark
Draft Genome Sequence of a Dictyoglomus sp. from an Enrichment Culture of a New Zealand Geothermal Spring, Anna-Louise Reysenbach, John A. Donaho, John F. Kelley, Emily St. John, Christina Turner, Mircea Podar, and Matthew B. Stott
Small Non-coding RNA Expression and Vertebrate Anoxia Tolerance, Claire L. Riggs, Amanda Summers, Daniel E. Warren, Göran E. Nilsson, Sjannie Lefevre, W. W. Dowd, Sarah Milton, and Jason E. Podrabsky
Small Noncoding RNA Profiles along Alternative Developmental Trajectories in an Annual Killifish, Amie L. Romney and Jason E. Podrabsky
Temperature-dependent Vitamin D Signaling Regulates Developmental Trajectory Associated with Diapause in an Annual Killifish, Amie L.T. Romney, Erin M. Davis, Meranda M. Corona, Josiah T. Wagner, and Jason Podrabsky
Dietary Specialization in Mutualistic Acacia-ants Affects Relative Abundance but not Identity of Host-associated Bacteria, Benjamin E.R. Rubin, Stephanie Kautz, Brian D. Wray, and Corrie S. Moreau
The Trade-off between Graduate Student Research and Teaching: A Myth?, Erin E. Shortlidge and Sarah L. Eddy
Viral Recombination: Ecology, Evolution, and Pathogenesis, Kenneth M. Stedman
A New Symbiotic Nanoarchaeote (Candidatus Nanoclepta Minutus) and its Host (Zestosphaera Tikiterensis gen. nov., sp. nov.) From a New Zealand Hot Spring, Emily St. John, Yitai Liu, Mircea Podar, Matthew B. Stott, Jennifer Meneghin, Zhiqiang Chen, Kirill Lagutin, Kevin Mitchell, and Anna-Louise Reysenbach
Diversity Patterns and Isolation of Planctomycetes Associated with Metalliferous Deposits from Hydrothermal Vent Fields Along the Valu Fa Ridge (SW Pacific), Julie Endresen Storesund, Anders Lanzèn, Antonio Garcìa-Moyano, Anna-Louise Reysenbach, and Lise Øvreås