Follow

Submissions from 2019

Forest Passerines as a Novel Dispersal Vector of Viable Bryophyte Propagules, Matthew W. Chmielewski and Sarah M. Eppley

PDF

Genome Sequences of Three Cruciviruses Found in the Willamette Valley (Oregon), Ignacio de la Higuera, Ellis L. Torrance, Alyssa A. Pratt, George Kasun, Amberlee Maluenda, and Kenneth M. Stedman

Trait Divergence, Not Plasticity, Determines the Success of a Newly Invasive Plant, Gina L. Marchini, Caitlin A. Maraist, and Mitchell B. Cruzan

PDF

Disruption of CUL3-mediated Ubiquitination Causes Proximal Tubule Injury and Kidney Fibrosis, Turgay Saritas, Catherina A. Cuevas, Mohammed Z. Ferdaus, Christophe Kuppe, Rafael Kramann, Marcus J. Moeller, Jurgen Floege, Jeffrey Singer, and James A. McCormick

PDF

Despite Similar Perceptions and Attitudes, Postbaccalaureate Students Outperform in Introductory Biology and Chemistry Courses, Erin E. Shortlidge, Liz Rain-Griffith, Chloe Shelby, Gwen Shusterman, and Jack Barbera

Illuminating the Obscured Phylogenetic Radiation of South American Sylvilagus Gray, 1867 (Lagomorpha: Leporidae), Sofia Marques Silva, Luis A. Ruedas, Larissa Hasnah Santos, Jose de Sousa e Silva, and Alexandre Aleixo

Deep-sea Hydrothermal Vent Metagenome-assembled Genomes Provide Insight into the Phylum Nanoarchaeota, Emily St. John, Gilberto E. Flores, and Jennifer Meneghin

PDF

A Framework to Guide Undergraduate Education in Interdisciplinary Science, Brie Tripp and Erin E. Shortlidge

PDF

Antioxidant Capacity and Anoxia-tolerance in Austrofundulus limnaeus Embryos, Josiah Tad Wagner, Michael J. Knapp, and Jason E. Podrabsky

Sex and Mitonuclear Adaptation in Experimental Caenorhabditis elegans Populations, Riana I. Wernick, Stephen F. Christy, Dana K. Howe, Jennifer A. Sullins, Joseph F. Ramirez, Maura Sare, McKenna J. Penley, Levi T. Morran, Dee R. Denver, and Suzanne Estes

Submissions from 2018

Evidence for Human-mediated Range Expansion and Gene Flow in an Invasive Grass, Tina M. Arredondo, Gina L. Marchini, and Mitchell B. Cruzan

PDF

Quantitative Effects of Soil Salinity on the Symbiosis of Wild Lima Bean (Phaseolus lunatus L.) and Bradyrhizobium in Costa Rica, Daniel J. Ballhorn, Emily R. Wolfe, Jess Tyler, Wren Ronan, Scott Sands-Gouner, Curran Shaw, Mehmet Ali Balkan, and Stefanie Kautz

Annual Survival and Breeding Dispersal of a Migratory Passerine, the Scissor-tailed Flycatcher, Adam J. Becker, Diane V. Roeder, Michael S. Husak, and Michael T. Murphy

A Mitochondrial Phylogeny of the Family Onychoteuthidae Gray, 1847 (Cephalopoda: Oegopsida), Kat S.R. Bolstad, Heather E. Braid, Jan M. Strugnell, Annie R. Lindgren, Alexandra Lischka, Tsunemi Kubodera, Vladimir L. Laptikhovsky, and Alvaro Roura Labiaga

PDF

Genome-Wide Screening of Potential RNase Y-Processed mRNAs in the M49 Serotype Streptococcus Pyogenes NZ131, Zhiyun Chen, Rahul Raghavan, Fengxia Qi, Justin Merritt, and Jens Kreth

PDF

Dual Gain and Loss of Cullin 3 Function Mediates Familial Hyperkalemic Hypertension, Ryan J. Cornelius, Chang Zhang, Kayla J. Erspamer, Larry N. Agbor, Curt D. Sigmund, Jeffrey Singer, Chao-Ling Yang, and David H. Ellison

PDF

Displacement of the Transcription Factor B Reader Domain During Transcription Initiation, Stefan Dexl, Robert Reichelt, Katharina Kraatz, Sarah Schulz, Dina Grohmann, Michael S. Bartlett, and Michael Thomm

PDF

Origin, Evolution, and Loss of Bacterial Small RNAs, H. Auguste Dutcher and Rahul Raghavan

Rapid Population Sex-Ratio Changes in the Moss Ceratodon Purpureus, Sarah M. Eppley, Todd Rosenstiel, Matthew Chmielewski, S. Woll, Zoe Shaw, and Erin Shortlidge

Mutant Cullin 3 Causes Familial Hyperkalemic Hypertension Via Dominant Effects, Mohammed Z. Ferdaus, Lauren N. Miller, Larry N. Agbor, Turgay Saritas, Jeffrey D. Singer, Curt D. Sigmund, and James A. McCormick

PDF

Multiple Acquisitions of Pathogen-Derived Francisella Endosymbionts in Soft Ticks, Jonathan G. Gerhart, H. Auguste Dutcher, Amanda E. Brenner, Abraham S. Moses, Libor Grubhoffer, and Rahul Raghavan

PDF

Comparative Genetic and Genomic Analysis of the Novel Fusellovirus Sulfolobus Spindle-Shaped Virus 10, David Andrew Goodman and Kenneth M. Stedman

PDF

Comparative Genetic and Genomic Analysis of the Novel Fusellovirus Sulfolobus Spindle-Shaped Virus 10, David Andrew Goodman and Kenneth M. Stedman

PDF

Catching the Wave: Are Biology Graduate Students on Board with Evidence-Based Teaching?, Emma C. Goodwin, Jane N. Cao, Miles Fletcher, Justin L. Flaiban, and Erin E. Shortlidge

Physiological Vagility Affects Population Genetic Structure and Dispersal and Enables Migratory Capacity in Vertebrates, Thomas V. Hancock and Michael S. Hedrick

Density-Dependent Pollination and Germination in the Patchy Vernal Pool Species Lasthenia californica, Elizabeth C. Hendrickson, Pamela G. Thompson, and Mitchell B. Cruzan

Anuran Amphibians as Comparative Models for Understanding Extreme Dehydration Tolerance: A Unique Negative Feedback Lymphatic Mechanism for Blood Volume Regulation, Stanley S. Hillman

PDF

Assembly and Analysis of Unmapped Genome Sequence Reads Reveal Novel Sequence and Variation in Dogs, Lindsay Adrian Holden, Meharji Arumilli, Marjo K. Hytönen, Sruthi Hundi, Jarkko Salojärvi, Kim H. Brown, and Hannes Lohi

PDF

Baseline mRNA Expression Differs widely Between Common Laboratory Strains of Zebrafish, Lindsay Holden and Kim H. Brown

An Interrogation of Shared and Unique Copy Number Variants Across Genetically Distinct Zebrafish Strains, Lindsay Holden, Charles Wilson, and Zachary Heineman

PDF

Constitutive MAP-kinase Activation Suppresses Germline Apoptosis in NTH-1 DNA Glycosylase Deficient C. elegans, Henok Kassahun, Tamina SenGupta, Alfonso Schiavi, Suzanne Estes, Silvia Maglioni, Hanne K. Skjeldam, Katarzyna Arczewska, Nicole L. Brockway, Lars Eide, Natascia Ventura, and Hilde Nilsen

PDF

Connecting Chemistry to Community with Deliberative Democracy, Regis Komperda; Jack Barbera; Erin Shortlidge; Gwen Shusterman; and STEM Education and Equity Institute, Portland State University

PDF

Sexually Dimorphic Patterns of Cell Proliferation in the Brain Are Linked to Seasonal Life-History Transitions in Red-Sided Garter Snakes, Deborah Lutterschmidt, Ashley R. Lucas, Ritta A. Karam, Vicky T. Nguyen, and Meghann R. Rasmussen

PDF

Follow the Rain? Environmental Drivers of Tyrannus Migration across the New World, Maggie P. MacPherson, Alex E. Jahn, Michael T. Murphy, Daniel H. Kim, Victor R. Cueto, Diego T. Tuero, and Elliot D. Hill

Selective Differentiation During the Colonization and Establishment of a Newly Invasive Species, Gina L. Marchini, Tina M. Arredondo, and Mitchell B. Cruzan

PDF

Replication Rapidly Recovers and Continues in the Presence of Hydroxyurea in Escherichia coli, Samvel A. Nazaretyan, Neda Savic, Michael Sadek, Brandy J. Hackert, Justin Courcelle, and Charmain T. Courcelle

Divergence in Life-History and Developmental Traits in Silvery-Thread Moss (Bryum argenteum Hedw.) Genotypes between Golf Course Putting Greens and Native Habitats, Zane Raudenbush, Joshua L. Greenwood, D. Nicholas McLetchie, Sarah M. Eppley, Steven J. Keeley, Richard C. Castetter, and Lloyd R. Stark

PDF

Draft Genome Sequence of a Dictyoglomus sp. from an Enrichment Culture of a New Zealand Geothermal Spring, Anna-Louise Reysenbach, John A. Donaho, John F. Kelley, Emily St. John, Christina Turner, Mircea Podar, and Matthew B. Stott

PDF

Small Non-coding RNA Expression and Vertebrate Anoxia Tolerance, Claire L. Riggs, Amanda Summers, Daniel E. Warren, Göran E. Nilsson, Sjannie Lefevre, W. W. Dowd, Sarah Milton, and Jason E. Podrabsky

PDF

Small Noncoding RNA Profiles along Alternative Developmental Trajectories in an Annual Killifish, Amie L. Romney and Jason E. Podrabsky

Temperature-dependent Vitamin D Signaling Regulates Developmental Trajectory Associated with Diapause in an Annual Killifish, Amie L.T. Romney, Erin M. Davis, Meranda M. Corona, Josiah T. Wagner, and Jason Podrabsky

Dietary Specialization in Mutualistic Acacia-ants Affects Relative Abundance but not Identity of Host-associated Bacteria, Benjamin E.R. Rubin, Stephanie Kautz, Brian D. Wray, and Corrine S. Moreau

A New Species of Cottontail Rabbit (Lagomorpha: Leporidae: Sylvilagus) from Suriname, With Comments on the Taxonomy of Allied Taxa from northern South America, Luis A. Ruedas

PDF

The Trade-off between Graduate Student Research and Teaching: A Myth?, Erin E. Shortlidge and Sarah L. Eddy

PDF

Viral Recombination: Ecology, Evolution, and Pathogenesis, Kenneth M. Stedman

A New Symbiotic Nanoarchaeote (Candidatus Nanoclepta Minutus) and its Host (Zestosphaera Tikiterensis gen. nov., sp. nov.) From a New Zealand Hot Spring, Emily St. John, Yitai Liu, Mircea Podar, Matthew B. Stott, Jennifer Meneghin, Zhiqiang Chen, Kirill Lagutin, Kevin Mitchell, and Anna-Louise Reysenbach

Diversity Patterns and Isolation of Planctomycetes Associated with Metalliferous Deposits from Hydrothermal Vent Fields Along the Valu Fa Ridge (SW Pacific), Julie Endresen Storesund, Anders Lanzèn, Antonio Garcìa-Moyano, Anna-Louise Reysenbach, and Lise Øvreås

PDF

Dynamics of Prochlorococcus Diversity and Photoacclimation During Short-Term Shifts in Water Column Stratification at Station ALOHA, Anne W. Thompson, Ger van den Engh, Nathan A. Ahlgren, Kathleen Kouba, Samantha Ward, Samuel T. Wilson, and David M. Karl

PDF

Taxonomy Based on Science is Necessary for Global Conservation, Scott A. Thomson, Richard L. Pyle, Shane T. Ahyong, Miguel Alonso-Zarazaga, Joe Ammirati, Luis A. Ruedas, and +several additional authors

PDF

Identification of Novel MITEs (miniature inverted-repeat transposable elements) in Coxiella Burnetii: Implications for Protein and Small RNA Evolution, Shaun Wachter, Rahul Raghavan, Jenny Wachter, and Michael F. Minnick

PDF

The Genome of Austrofundulus Limnaeus Offers Insights into Extreme Vertebrate Stress Tolerance and Embryonic Development, Josiah Tad Wagner, Param Priya Singh, Amie L. Romney, Claire L. Riggs, Patrick Minx, Steven Cody Woll, Jake Roush, Wesley C. Warren, Anne Brunet, and Jason E. Podrabsky

Spatio-Temporal Characterization of Pinniped Strandings and Human Interaction Cases in the Pacific Northwest, 1991-2016, Amanda J. Warlick, Deborah A. Duffield, Dyanna M. Lambourn, Steven J. Jeffries, James M. Rice, Joseph K. Gaydos, Jessica L. Huggins, John Calambokidis, Lesanna L. Lahner, Jennifer Olsen, Erin D'Agnese, Victoria Souze, Alysha Elsby, and Stephanie A. Norman

SbcC-SbcD and Exol Process Convergent Forks to Complete Chromosome Replication, Brian Wenderl, Charmain Courcelle, Jessica Cole, and Justin Courcelle

Fungal Endophyte-Infected Leaf Litter Alters In-Stream Microbial Communities and Negatively Influences Aquatic Fungal Sporulation, Emily R. Wolfe, Brett Steven Younginger, and Carri J. LeRoy

Intestinal Microbiota Lipid Metabolism Varies Across Rainbow Trout (Oncorhynchus mykiss) Phylogeographic Divide, C. C. Yildirimer and Kim H. Brown

PDF

LytTR Regulatory Systems: A Potential New Class of Prokaryotic Sensory System, Zhengzhong Zou, Hua Qin, Amanda E. Brenner, Rahul Raghavan, Jess A. Millar, Qiang Gu, Zhoujie Xie, Jens Kreth, and Justin Merritt

Submissions from 2017

Colonization by Nitrogen-fixing Frankia Bacteria Causes Short-Term Increases in Herbivore Susceptibility in Red Alder (Alnus Rubra) Seedlings, Daniel J. Ballhorn, Jacob D. Elias, Mehmet Ali Balkan, Rachel F. Foredyce, and Peter G. Kennedy

PDF

Females are the Brighter Sex: Differences in External Fluorescence across Sexes and Life Stages of a Crab Spider, Erin E. Brandt and Susan E. Masta

PDF

Adaptive Evolution under Extreme Genetic Drift in Oxidatively Stressed Caenorhabditis elegans, Stephen Fuller Christy, Riana I. Wernick, Michael James Lue, Griselda Velasco, Dana K. Howe, Dee R. Denver, and Suzanne Estes

PDF

Rolling Circle Mutagenesis of GST-mCherry to Understand Mutation, Gene Expression, and Regulation, Jessica Cole, Amanda Ferguson, Verónica A. Segarra, and Susan Walsh

Patterns of Stress Responses Shift During Seasonal Life-History Transitions: An Analysis Comparing Baseline, Maximal and Integrated Corticosterone in Female Red-Sided Garter Snakes (Thamnophis sirtalis parietalis), Catherine A. Dayger and Deborah I. Lutterschmidt

High Energy or Protein Concentrations in Food as Possible Offsets for Cyanide Consumption by Specialized Bamboo Lemurs in Madagascar, Timothy M. Eppley, Chia L. Tan, Summer J. Arrigo-Nelson, Daniel J. Ballhorn, Giusseppe Donati, and Joerg U. Ganzhorn

PDF

Editorial: Genetics, Genomics and –Omics of Thermophiles, Kian Mau Goh, Kok-Gan Chan, Rajesh Kumar Sani, Edgardo Ruben Donati, and Anna-Louise Reysenbach

PDF

A Metabolic Hypothesis for the Evolution of Temperature Effects on the Arterial PCO2 and pH of Vertebrate Ectotherms, Stanley S. Hillman and Michael Scott Hedrick

PDF

Genetic Analysis of the Major Capsid Protein of the Archaeal Fusellovirus SSV1: Mutational Flexibility and Conformational Change, Eric A. Iverson, David A. Goodman, Madeline E. Gorchels, and Kenneth M. Stedman

Extreme Mutation Tolerance: Nearly Half of the Archaeal Fusellovirus Sulfolobus Spindle-Shaped Virus 1 Genes Are Not Required for Virus Function, Including the Minor Capsid Protein Gene vp3, Eric Iverson, David A. Goodman, Madeline E. Gorchels, and Kenneth M. Stedman

PDF

An Efficient Pipeline to Generate Data for Studies in Plastid Population Genomics and Phylogeography, Brendan F. Kohrn, Jessica M. Persinger, and Mitchell B. Cruzan

The road less traveled - defining molecular commensalism with Streptococcus sanguinis, Jens Kreth, Rodrigo A. Giacaman, Rahul Raghavan, and Justin Merritt

PDF

PCR-Activated Cell Sorting as a General, Cultivation-Free Method for High-Throughput Identification and Enrichment of Virus Hosts, Shaun W. Lim, Shea T. Lance, Kenneth M. Stedman, and Adam R. Abate

PDF

Arginine Vasotocin and Neuropeptide Y Vary with Seasonal Life-History Transitions in Garter Snakes, Ashley R. Lucas, Daelyn Y. Richards, Lucy M. Ramirez, and Deborah Lutterschmidt

PDF

Use of Gene Editing in USDA Research, Mark R. McLellan, Patsy Brannon, Adriana Campa, Carrie Castille, Steven Daley-Laursen, Roch Gaussoin, Govind Kannan, Mark Lawrence, and Dawn Thilmany

PDF

Accumulation and Expression of Multiple Antibiotic Resistance Genes in Arcobacter Cryaerophilus that Thrives in Sewage, Jess A. Millar and Rahul Raghavan

PDF

Horizontally Acquired Biosynthesis Genes Boost Coxiella burnetii's Physiology, Abraham S. Moses, Jess A. Millar, Matteo Bonazzi, Paul A. Beare, and Rahul Raghavan

Annual killifishes as model systems for advancing understanding of evolution and developmental biology, Jason E. Podrabsky and Maria Arezo

PDF

Embryonic Development of the Annual Killifish Austrofundulus limnaeus: An Emerging Model for Ecological and Evolutionary Developmental Biology Research and Instruction, Jason E. Podrabsky, Claire L. Riggs, Amie L. Romney, S. Cody Woll, Josiah T. Wagner, Kristin M. Culpepper, and Timothy Grant Cleaver

PDF

Assessing the Potential of Land Use Modification to Mitigate Ambient NO2 and Its Consequences for Respiratory Health, Meenakshi Rao, Linda A. George, Vivek Shandas, and Todd N. Rosenstiel

PDF

Winter Diet of Bobolink, a Long-Distance Migratory Grassland Bird, Inferred from Feather Isotopes, Rosalind B. Renfrew, Jason M. Hill, Daniel H. Kim, Christopher Romanek, and Noah G. Perlut

Mitochondria-derived Small Non-coding RNAs in Extreme Anoxia Tolerance, Claire L. Riggs and Jason E. Podrabsky

PDF

Small Noncoding RNA Expression During Extreme Anoxia Tolerance of Annual Killifish (Austrofundulus limnaeus) Embryos, Claire L. Riggs and Jason E. Podrabsky

PDF

Transcriptomic Analysis of Maternally Provisioned Cues for Phenotypic Plasticity in the Annual Killifish, Austrofundulus limnaeus, Amie L. Romney and Jason E. Podrabsky

Epigenetic Regulation of Alternative Developmental Trajectories, Arnie Lynn T. Romney and Jason E. Podrabsky

Cephalopod Biodiversity in the Vicinity of Bear Seamount, Western North Atlantic Based on Exploratory Trawling From 2000 to 2014, Elizabeth K. Shea, Heather Judkins, Michelle D. Staudinger, and Valerie H. Dimkovikj

PDF

Each to Their Own CURE: Faculty Who Teach Course-Based Undergraduate Research Experiences Report Why You Too Should Teach a CURE, Erin E. Shortlidge, Gita Bangera, and Sara Brownell

Passive Warming Reduces Stress and Shifts Reproductive Effort in the Antarctic Moss, Polytrichastrum alpinum, Erin E. Shortlidge, Sarah M. Eppley, Hans Kohler, Todd N. Rosenstiel, Gustavo E. Zúñiga, and Angélica Casanova-Katny

PDF

Experimental Evolution with Caenorhabditis Nematodes, Henrique Teotónio, Suzanne Estes, Patrick C. Phillips, and Charles F. Baer

Robustness of a model microbial community emerges from population structure among single cells of a clonal population, Anne W. Thompson, Serdar Turkarslan, Christina E. Arens, Adrian Lopez Garcia de Lomana, Arjun V. Raman, David A. Stahl, and Nitin S. Baliga

PDF

Dynamics of Prochlorococcus and Synechococcus at Station ALOHA Revealed through Flow Cytometry and High-Resolution Vertical Sampling, Ger J. van den Engh, Joseph K. Doggett, Anne W. Thompson, Martina A. Doblin, Carla N.G. Gimpel, and David M. Karl

PDF

Insulin-Like Growth Factor Signaling Regulates Developmental Trajectory Associated with Diapause in Embryos of the Annual Killifish Austrofundulus limnaeus, S. Cody Woll and Jason E. Podrabsky

Fungal Endophyte Communities in the Temperate Fern Polystichum munitum Show Early Colonization and Extensive Temporal Turnover, Brett S. Younginger and Daniel J. Ballhorn

PDF

Is Biomass a Reliable Estimate of Plant Fitness?, Brett S. Younginger, Dagmara Sirova, Mitchell B. Cruzan, and Daniel J. Ballhorn

Submissions from 2016

PDF

Bayesian Methods for Comparing Species Physiological and Ecological Response Curves, Michael B. Ashcroft, Angélica Casanova-Katny, Kerrie Mengersen, Todd N. Rosenstiel, Johanna D. Turnbull, Jane Wasley, Melinda J. Waterman, Gustavo E. Zúñiga, and Sharon A. Robinson

PDF

Scientific Engagement at FDA: A Report to the FDA Science Board from the Scientific Engagement Subcommittee, Anthony Bahinski, Maria C. Friere, Mark R. McLellan, Bruce M. Psaty, Dan M. Roden, and Scott J. Steele

Herbivore Damage Induces a Transgenerational Increase of Cyanogenesis in Wild Lima Bean (Phaseolus lunatus), Daniel J. Ballhorn, Stefanie Kautz, and Jessie May Lauman

PDF

Coevolution of Cyanogenic Bamboos and Bamboo Lemurs on Madagascar, Daniel J. Ballhorn, Fanny Patrika Rakotoarivelo, and Stefanie Kautz

PDF

Friend or Foe—Light Availability Determines the Relationship between Mycorrhizal Fungi, Rhizobia and Lima Bean (Phaseolus lunatus L.), Daniel J. Ballhorn, Martin Schädler, Jacob D. Elias, Jess A. Millar, and Stefanie Kautz

Spatial Patterns of Extra-pair Paternity for Spotted Towhees Pipilo Maculatus in Urban Parks, Sarah Bartos Smith, Jenny E. McKay, Michael T. Murphy, and Deborah A. Duffield

Demography of a Ground Nesting Bird in an Urban System: Are Populations Self-Sustaining?, Sarah Bartos Smith, Jenny E. McKay, Jennifer K. Richardson, Amy A. Shipley, and Michael T. Murphy

PDF

Reproductive Output of Mosses Under Experimental Warming on Fildes Peninsula, King George Island, Maritime Antarctica, Angélica Casanova-Katny, G. A. Torres-Mellado, and Sarah M. Eppley

Paternal Behaviour in a Socially Monogamous but Sexually Promiscuous Passerine Bird, Christopher M. Chutter, Lucas J. Redmond, Nathan W. Cooper, Amy C. Dolan, Deborah A. Duffield, and Michael T. Murphy

Postpollination Discrimination Between Self and Outcross Pollen Covaries with the Mating System of a Self-Compatible Flowering Plant, Mitchell B. Cruzan and Spencer C. H. Barrett